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7 protocols using il 13 pe

1

Flow Cytometric Immunophenotyping of Mast Cells

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Surface staining was performed using the following antibodies: CD117 (c-Kit)-APC or APC/Cy7, FcεRIα-PE, CD11b (Mac-1)-Pacific Blue (all from Biolegend) and Ly-6G (Gr-1)-PE-Cyanine7 (eBioscience). All antibodies for surface staining were used at a dilution of 1:200. For intracellular cytokine staining, cells were stimulated with 1 μg/ml IgE–anti-DNP antibody and 0.2 μg/mL HSA-DNP antigen (both from Sigma) for 3.5 h, with the addition of brefeldin A in the last two hours of stimulation, as previously described3 (link),4 (link). The following antibodies were used: IL-6-PE or APC, TNF-α-PE/Cy7 (both from Biolegend) and IL-13-PE (eBioscience). All antibodies used in this study are listed in Supplementary Table 1. Flow-cytometry data were collected on a FACS Symphony A5 or Fortessa (BD Biosciences) and analyzed by FlowJo version 10 (BD Biosciences).
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2

Multiparametric Flow Cytometry for Cytokine and Transcription Factor Analysis

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For cytokine staining, cells were restimulated with 20 nM PMA and 1μM ionomycin for 4 hours, and 5μg/ml brefeldin A was added during the last 2 hours of restimulation. Cells were stained with the viability dye eFluor780 (eBiosciences; Cat # 65-0865-14), and then fixed in 4% paraformaldehyde for 8 minutes at room temperature. Cytokine staining was done in permeabilization buffer containing 0.05% saponin. For transcription factor staining, unstimulated cells were fixed, permeabilized, and stained using the FoxP3 Staining Kit (eBiosciences; Cat # 00-5523-00). Samples were analyzed with a flow cytometer (BD LSR II). Mouse antibodies: IL-13-PE (eBiosciences; eBio13A), IL-4-APC (eBiosciences; 11B11), IL-5-PE (Biolegend; TRFK5), IFNg-FITC (eBiosciences; XMG1.2), TNFa-AlexaFluor700 (BD Biosciences; MP6-XT22), and GATA-3-PE (eBiosciences; E50-2440). Human antibodies: IL-13-FITC (eBiosciences; PVM13-1), IL-4-APC (BD Biosciences; 8D4-8), IL-17A-eFluor450 (eBiosciences; eBio17B7), and IL-17F-PE (BD Pharmingen; 079-289).
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3

Multicolor Flow Cytometry for Treg Immunophenotyping

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Multicolour flow cytometry was used to assess the immunophenotype of Tregs. Antibodies against the following molecules were provided by: CD3 BV650 (BD Biosciences), CD8 BV450 (BD Biosciences), CD4 APC-H7 (BD Biosciences), CD25 PerCPCy5.5 (BD Biosciences), CD73 eFluor 450 (eBioscience™), PD-1 BV 650 (Biolegend). Dead cells were stained by LIVE/DEAD® Fixable Blue Dead Cell Stain Kit (Life Technology). For intracellular staining, cells were fixed and permeabilized using the FoxP3/Transcription Factor Staining Buffer Set (eBioscience), and then stained with FoxP3 Alexa Fluor 488 (eBioscience), IL13-PE (eBioscience) and Granzyme B APC (BioLegend). Appropriate isotype controls were used to set the quadrants and to evaluate background staining. Cells were analysed using an LSRII flow cytometer with BD FACSDIVA software.
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4

Multiparametric Flow Cytometry for Cytokine and Transcription Factor Analysis

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For cytokine staining, cells were restimulated with 20 nM PMA and 1μM ionomycin for 4 hours, and 5μg/ml brefeldin A was added during the last 2 hours of restimulation. Cells were stained with the viability dye eFluor780 (eBiosciences; Cat # 65-0865-14), and then fixed in 4% paraformaldehyde for 8 minutes at room temperature. Cytokine staining was done in permeabilization buffer containing 0.05% saponin. For transcription factor staining, unstimulated cells were fixed, permeabilized, and stained using the FoxP3 Staining Kit (eBiosciences; Cat # 00-5523-00). Samples were analyzed with a flow cytometer (BD LSR II). Mouse antibodies: IL-13-PE (eBiosciences; eBio13A), IL-4-APC (eBiosciences; 11B11), IL-5-PE (Biolegend; TRFK5), IFNg-FITC (eBiosciences; XMG1.2), TNFa-AlexaFluor700 (BD Biosciences; MP6-XT22), and GATA-3-PE (eBiosciences; E50-2440). Human antibodies: IL-13-FITC (eBiosciences; PVM13-1), IL-4-APC (BD Biosciences; 8D4-8), IL-17A-eFluor450 (eBiosciences; eBio17B7), and IL-17F-PE (BD Pharmingen; 079-289).
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5

Cytokine Production Assay Protocol

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To examine effector cytokine production, single-cell suspension of SVF was stimulated with following concentrations of PMA and Ionomycin (Sigma-Aldrich) in the presence of 1 μg/ml brefeldin A (BD Bioscience) for 4 hours at 37°C in a CO2 incubator. For IFN-γ production from T cells and NK cells, PMA (10 ng/ml) and Ionomycin (1μg/ml) were used. For IL-5, IL-13 production from ILC2, and IL4 from eosinophils, PMA (40ng/ml) and Ionomycin (500ng/ml) were used. Cells were then washed, surface stained, fixed, and permeabilized using fix perm buffer (eBioscience), followed by intracellular staining with IFN-γ-APC, IL-5-APC, IL-13-PE, and IL4–FITC antibodies from eBioscience.
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6

Immunophenotyping of Mast Cells

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The following antibodies were used for surface staining (all from BioLegend): CD117 (Kit)-APC/Cy7 (or APC); FcεRIα-PE; Ly6G (Gr1)-PE/Cy7 (or fluorescein isothiocyanate [FITC]); and CD11b (Mac1)-Pacific blue. Intracellular cytokine staining was performed exactly as described (Deho' et al., 2014 (link); Rusca et al., 2012 (link)). Briefly, cells were stimulated with 1 μg/ml IgE-anti-DNP and 0.2 μg/ml HSA-DNP (both from Sigma) for 3 hr, with the addition of 10 μg/ml brefeldin A in the last 2 hr of stimulation. Cells were fixed with 4% paraformaldehyde prior to permeabilization and staining with the following antibodies: IL-6-PE, TNF-α-PE/Cy7 (BioLegend), and IL-13-PE (eBioscience).
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7

Murine Myeloid Dendritic Cell Immunophenotyping

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Single lung or LN cell suspensions (1×106 cells/100 μl) were incubated in FACS buffer (PBS, 1% FBS, 0.05% NaN3) containing CD16/32 Fc-blocking antibody (2.4G2, BD Biosciences, San Jose, CA) for 30 minutes at 4°C and then stained with fluorescently-labeled antibodies for 30 minutes at 4°C. Cells were washed repeatedly in FACS buffer, fixed in 2% PFA for 20 minutes at room temperature, washed and resuspended in FACS buffer for flow cytometry analysis. Data was acquired using the LSR II flow cytometer (BD Biosciences) and analyzed using FACSDiVa (BD Biosciences) and FlowJo software (TreeStar, Inc. Ashland, OR). The following mouse-specific monoclonal antibodies were purchased from eBioscience with the clone indicated in parentheses: CD11c-Alexa Fluor 647 (HL3), CD11b-PE-Cy7 (M1/70), Gr1-APC-eFluor780 (RB6-8C5), CD317-Alexa Fluor 488 (eBio927), CD80-PE (16-10A1), CD86-PE (GL1), PD-L1-PE (MIH5), B7-DC-PE (TY25), CD4-PE-Cy7 (RM4-5), IL-13-PE (eBio13A) and IL-17A-Alexa Fluor 647 (eBio17b7). Myeloid DCs were defined as CD11c+CD11b+Gr1CD317.
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