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257 protocols using tnf α

1

Tumor Necrosis Factor Stimulation

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Cells were plated in 24 well plates with 1 × 105 cells per well and treated for 48 h with 10 ng/ml TNF-a (Cell Signaling Technology, Danvers, MA) 1 d post-transfection.
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2

EGF and TNFα Signaling Analysis

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DK-MG cells were seeded in 6-well plates at 2×105 cells per well for western blot analysis or at 4×104 cells per well for real-time observation, incubated overnight to allow for adhesion and serum starved for subsequent 24h. Serum free medium containing appropriate inhibitors was applied onto cells and incubated for indicated amount of time, prior to stimulation with 20ng/mL EGF (Sigma-Aldrich) or 5ng/mL TNFa (Cell Signaling Technology) for 20 or 30min, as indicated, prior to lysis for western blotting or left for real-time observation. Following concentrations of inhibitors were used: DMSO (Sigma, Cat. No.D2438, solvent control), 10 μM Erlotinib (Molecula; Cat. No. 89983631), 2.5 μM ACHP (Tocris Bioscience, Cat. No. 4547), 1 μM CID2858522 (Tocris Bioscience, Cat. No. 4246).
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3

Western Blot Analysis of Oxidative Stress Markers

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Western blot assays were performed as described before [29 (link)]. Briefly, liver tissues were homogenized in RIPA lysis buffer (Santa Cruz Biotechnology, Santa Cruz, CA). Proteins were collected by centrifuging at 12,000 g at 4°C. The sample of total protein was separated on 10% SDS-PAGE gels and transferred to nitrocellulose membranes (Bio-Rad, Hercules, CA). These membranes were rinsed briefly in tris-buffered saline containing 0.05% Tween 20 (TBST), blocked in blocking buffer (5% milk and 0.5% BSA) for 1 h, and then incubated with different primary antibodies overnight at 4°C, followed by three washes with TBST and incubation with secondary horseradish peroxidase-conjugated antibody for 1 h at room temperature. Antigen-antibody complexes were then visualized using ECL kit (Amersham, Piscataway, NJ). The primary antibodies used here include those against 3-nitrotyrosine (3-NT, 1 : 2000, Millipore, Billerica, MA), 4-hydroxynonenal (4-HNE, 1 : 2000, Alpha Diagnostic International, San Antonio, TX), ICAM-1 (1 : 500), CTGF and β-actin (1 : 1000, Santa Cruz Biotechnology, Santa Cruz, CA), PAI-1 (1 : 2000, BD Biosciences, Sparks, MD), TNF-a (1 : 500), and TGF-β1 (1 : 1000; Cell Signaling, Danvers, MA).
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4

PLA Polymer Functionalization for Cell Studies

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Polylactic acid (PLA, Mw 80 ​kDa) was purchased from Rhawn Chemicals Co., Ltd. (Shanghai). MFQ hydrochloride, 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDCI), 4-dimethylaminopyridine (DMAP), and dichloromethane were provided by Shanghai Aladdin Biochemical Technology Co., Ltd. HFIP (1,1,1,3,3,3-hexafluoro-2-propanol) was obtained from Da-Rui Fine Chemical Co., Ltd. A Cell Counting Assay Kit-8 CCK8 was purchased from Dojindo China Co., Ltd. Phalloidin was purchased from Dojindo China Co., Ltd. (Shanghai). Fibronectin, anti-CD31 (catalog #: ab9498), and anti-CGRP (catalog #: ab36001) were purchased from Abcam. Antibodies to CD68 (catalog #: 97,778), NeuN (catalog #: 94403s), a-smooth muscle actin (a-SMA) (catalog #: 19245s), p-CREB (catalog #: 9197s), and TNF-a were obtained from Cell Signaling Technologies. Anti-IL-1β was purchased from Proteintech Group, Inc.
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5

Protein Transfer and Immunoblotting

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Trans‐Blot Transfer system (Bio‐Rad Laboratories) was used to transfer proteins to PVDF membranes. The PVDF membranes were then blocked with soluble 5% dry milk in 1x TBST (Tris‐buffered saline with 0.1% Tween‐20) for 1–2 h at room temperature and then incubated with primary antibody at 4°C overnight. The antibodies included TNFa, MMP‐3, MCP‐1(1:1000 dilution, Cell signalling technology), a‐tubulin (1:1000 dilution, Proteintech), and peroxidase‐conjugated secondary antibodies (1:1000 dilution, Proteintech). The PVDF membranes were then incubated with secondary antibodies. Images were obtained with image lab software using ChemiDoc charge‐coupled device (CCD) camera (Bio‐Rad Laboratories).
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6

Transgenic Mouse Model for Liver Fibrosis

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Green fluorescence transgenic male C57Bl/6 mice (n = 20) and normal male C57Bl/6 mice (n = 36) 2343 bought from Gem Pharmatech Biotechnology Co., LTD (Jiangsu, China), with certificate No.320727210100567527. The DMEM high-sugar medium, fetal calf serum (FBS), penicillin-streptomycin, phosphate buffer (PBS), trypsin–EDTA were bought from Biological Industries (Israel). The Gli1 antibody was bought from Abcam (Cambridge, England). α-SMA, SMAD2, SMAD4, β-actin and goat anti-rabbit IgG II were bought from Proteintech Group Inc. (Rosemont, USA). The antibodies of CD44, CD177 and CD34 were bought from Cell Signaling Technology, Inc. (Boston, USA); TNF-a. IL-1, IL-1B, BUN and Scr ELISA kit were bought from Bluef (Shanghai, China) Biotechnology Development Co., LTD. (Shanghai, China). The apoptosis detection kit was bought from Beyotime Biotechnology (Shanghai, China).
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7

Herbal Medicine for Inflammatory Bowel Disease

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Chinese herbal medicine was purchased from Nanjing Hospital of TCM affiliated to Nanjing University of Chinese Medicine, decoctioned to the appropriate concentration in the laboratory, stored at 4 °C after dispensing, then used for gavage. Common names and Latin names of ingredients in modified PD are presented in Table 1. TNF-a (#11948), IL-1β (#12703), IL-6 (#12153), STAT3 (#4904), phospho-STAT3 (#9145), NF-κB (#8242), phospho-NF-κB (Ser468) (#3039), NLRP3 (#15101) and β-actin (#4970) were purchased from Cell Signaling Technology (Danvers, MA). Dextran sulphate sodium (DSS; 36–50 kDa) was obtained from MP Biomedicals (Illkirch, France).
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8

Western Blot Analysis of Cellular Signaling

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Cells were lysed by RIPA buffer (50 mmol/L Tris-HCl, pH 7.4; 150 mmol/L NaCl; 1% (v/v) NP-40; 5 mmol/L EDTA; 1 mmol/L DTT; 0.5% sodium deoxycholate; 0.1% SDS; 1 mmol/L Na3VO4; and 1 mmol/L PMSF) and centrifuged at 12,000×g for 30 min at 4°C. Supernatant proteins were determined by Bradford method using BSA as standard and measured at 595 nm. After SDS page separation, proteins were transferred onto a PVDF membrane and revealed by ECL detection reagents. Primary antibodies used in the study included TNF-alpha, TRADD, β-actin, CaM, cytochrome C, calmodulin from Cell signaling technology (Denvers, MA, USA); caspase 8 were from Millipore (Billerica, MA, USA); RIP3 and calpain1 were from Biovision (Milpitas, CA, USA); caspase 3 and were from Abcam (Cambridge, UK).
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9

Pyrazole Modulation of Inflammatory Pathways

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Pyrazole was obtained from Sigma Aldrich, India. Ham's F-12 K (Kaighn's) Culture Medium, Trypsin, Fetal Bovine Serum (FBS), Bovine Serum Albumin (BSA), Antibiotic-actinomycotic solution were obtained from Hi-Media laboratories, India. Monoclonal antibodies (rabbit) such as MMP-2 (D8N9Y), NF-κB-p65 (D14E12) XpR, E-Cadherin (24E10), TNF-alpha, β-actin and HRP conjugated secondary antibodies (anti-rabbit) were purchased from Cell Signaling Technology (USA). Desalted & Hi-Pure Oligos include MMP-2, NF-κB-p65, E-Cadherin, TNF-α and β-actin were obtained from Eurofins Genomics (Bengaluru, India). Cytokine ELISA kits include TNF-α and IL-6 from Koma Biotech (Korea), iNOS and COX-2 from USCN Life science (China) were purchased.
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10

Immunoblotting Analysis of Cell Signaling

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Total cell extracts were obtained using NP-40 buffer (150 mM sodium chloride, 1 % NP-40, 50 mM Tris HCl pH 8) containing protease inhibitor cocktail (Roche) and phosphatase inhibitor (Roche). The extracts were resolved by SDS-PAGE and transferred to a polyvinylidene difluoride membrane (GE Healthcare). The proteins were detected with appropriate antibodies using the ECL detection system (GE Healthcare) or Super Signal West Femto (Life Technologies). Antibodies against the following proteins were used: Scd4 (Pineda), Caveolin-1 (Abcam), p-Caveolin-1 (Tyr14), Erk1/2, p-Erk1/2, il-1beta, and TNFalpha (all from Cell signaling).
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