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260 protocols using sigmastat

1

Comparative Analysis of Cell Layer Thickness and Gene Expression in RV16 Infection

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Thicknesses of cell layers were compared using paired t-test and Wilcoxon Signed Rank test using software (SigmaStat, Systat Inc.). SPRR1β and CAMP gene expression was analyzed by ΔΔCT method, with gene expression normalized to β-actin, and statistical analyses were done using paired t-test (SigmaStat). Treatment groups in RV16 replication experiments were compared via t-test or Mann-Whitney Rank Sum, also using software (SigmaStat). Effects of different levels of 1,25(OH)2D on cytokine/chemokine production in RV-infected cells were analyzed using three way ANOVA (SigmaStat).
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2

Genotype Association with Prostate Cancer

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SNP rs1800795 was tested for its association with prostate cancer. Odds ratios (ORs) and 95% confidence intervals were calculated for the genotype association with prostate cancer. Correlation between genotype distribution and individuals stratified by race and age was performed using logistic regression models. The log-linear model (LLM) was used as a test for independence in a two-way contingency table for multifactor dimensionality reduction (MDR) and to infer true associative structure in a set of multiple categorical variables such as disease status, genotype, race, and age. The NCSS 2007 (version 07.1.19; NCSS Kaysville, UT, USA) and SigmaStat (version 3.5; SigmaStat, San Jose, CA, USA) software packages were used for statistical analyses. P < 0.05 was considered to be statistically significant.
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3

Statistical Analysis of Hearing and Vision Impairment

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The measures of SCBM thickness were subjected to 1-way ANOVA analysis with the factor of genotype/treatment (, Kruskal-Wallis, SigmaStat, Jandel, San Jose, CA) followed by post-hoc multiple comparisons (Dunn's Method). For ABR analysis, hearing loss incurred at each timepoint for the Alport mice and their age-matched WT controls was subjected to ANOVA with factors of test frequency, and strain/test day with post-hoc comparisons made using the Holm-Sidak test (SigmaStat, Jandel, San Jose, CA). Significance was set at a p value ≤ 0.05. For all other analyses, one or two way (as appropriate) Student's t-test was used. Significance was set at the probability level of 0.05
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4

Dinophysis Abundance and Toxicity Analysis

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For all experiments, differences among treatments were assessed via a one- way analysis of variance (ANOVA) using SigmaStat within SigmaPlot 11.0; when data sets failed normality tests, Kruskal-Wallis ANOVAs by ranks were performed. The Student-Newman-Keuls method was used as a post hoc, pairwise, multiple comparison procedures. A one-way ANOVA was used for interannual comparisons of nutrient concentrations, nutrient ratios, and meteorological data between years or seasons. Additionally, Spearman’s rank order correlation matrices were used to assess the extent to which Dinophysis densities co-varied with other members of the plankton community during experiments. Lastly, multiple regression analyses were performed to determine the dependence of Dinophysis acuminata abundances and toxicity on all measured environmental variables (i.e. inorganic nutrients, organic nutrients, plankton groups, temperature, salinity, chlorophyll a, etc) using forward stepwise selection (F to enter p < 0.049; F to remove p > 0.050) in SigmaStat within SigmaPlot 11.0. Cell densities were log transformed prior to analysis. The small bloom (Table 1) that occurred in 2009 during which okadaic acid or pectenotoxins were not detected [32 (link)] was not considered in statistical analyses.
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5

Behavioral and Biochemical Analyses of Stress Response

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Data are shown as mean ± standard error of the mean (SEM). Values for integrated area under the curve (AUC) were calculated using the trapezoid rule. Two-way repeated measure analysis of variance (ANOVA) was used for comparisons of groups over time. Behavioral data from EPM and OFT were analyzed by t-test. All statistical analyses were performed using Sigma Stat (SYSTAT, San Jose, CA) software. Specific differences were determined by Bonferroni post hoc tests. When appropriate, outliers (determined using Grubb’s test [7 ]) were removed.. The homogeneity of variance was determined for each assay using Sigma Stat. The corticosterone assay required square root transformation to meet the criterion homogeneity. Effects were considered significant with a critical value α set at p <0.05.
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6

Efficient Data Analysis in Biological Research

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All figures were prepared with Microsoft Excel, SigmaPlot, and Adobe Photoshop software. Power analyses were conducted with preliminary data to determine final sample sizes. Data were expressed as mean ± SEM (standard error of mean). Holm–Sidak test and one-way ANOVA were performed data in figures with SigmaStat when necessary. Otherwise, student paired/unpaired t-tests were used between wt and het mice or between pre- and post-groups with Excel or SigmaStat.
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7

Statistical Analysis of Experimental Data

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The statistical analysis was performed with the commercially available statistical package from SigmaStat (version 3.1, Sigma Stat, SYSTAT, Point Richmond, CA). Data are expressed as mean ± standard error and analysed by one‐way analysis of variance. When a significant F‐value was found by one‐way analysis of variance, a Bonferroni's post hoc test was performed to demonstrate all pairwise multiple comparisons between the means. All calculated P‐values were two sided, and a P < 0.05 was considered significant.
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8

Comparative Statistical Analysis of Experimental Groups

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Results are expressed as mean AE the standard error of the mean. Differences between multiple groups were analyzed using one-way analysis of variance with the Stu-denteNewmaneKeuls post hoc test for all pairwise comparisons (SigmaStat; SPSS, Chicago, IL). Differences between two groups were analyzed using the Student's t-test (SigmaStat). Statistical significance was assumed when P < 0.05.
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9

Statistical Analysis of Experimental Data

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All the data obtained from different experiments were evaluated using statistical analysis. An unpaired t-test and a one-way analysis of variance (ANOVA) (the Fischer LSD, Waltham, MA, USA) test were conducted to compare the mean differences using Sigma Stat version 3.5. Comparisons with p < 0.05 were considered significantly different.
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10

Comparative Analysis of Cardiovascular Metrics

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Normality assumptions of continuous variables were examined with Kolmogorov–Smirnov test. Normally distributed variables are expressed as mean and standard deviation values, whereas non-normally distributed variables are presented as median and inter-quartile range values (IQR; 25th–75th percentile). Categorical variables were compared among the CAE, CAD, and control groups using the chi-square test for normally distributed variables and Fischer’s exact test for non-normally distributed variables. One-way analysis of variance (ANOVA) was used to test whether these three groups differed with regards to various continuous parameters of interest. A post hoc analysis with Tukey test was performed for identifying individual levels of statistical significance. The non-parametric Kruskal–Wallis test and post hoc analysis with Mann–Whitney U test were used if the homogeneity of variance assumption was violated. SigmaStat (Systat, San Jose, CA, USA) and GraphPad Prism (Dotmatics, Boston, MA, USA) were used for statistical analysis and generation of graphics, respectively.
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