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21 protocols using zf 0311

1

Immunofluorescent and Immunohistochemical Analysis of Autophagy and Lysosomal Proteins in Spleen Sections

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For immunofluorescent staining for light chain 3 (LC3) in spleen sections, nonspecific binding was blocked with 5% goat serum (cat. No: SL038, Solarbio Life Sciences), followed by immunolabeling using a primary antibody against LC3 (cat. No: 4,108; Cell Signaling Technology) and a secondary antibody conjugated to fluorescein isothiocyanate (cat. No: ZF-0311, ZSGB-BIO). Immunofluorescence images were acquired using a 3DHISTECH P250 FLASH confocal microscope with a ×63 objective. For immunohistochemistry, tissue sections were incubated with a primary antibody against lysosome-associated membrane protein (LAMP) 2 (cat. No: 125,068, Abcam) or ferritin heavy chain 1 (FTH1, cat. No: 4,393, Cell Signaling Technology) and visualized using a streptavidin–biotin immunoenzymatic antigen detection system (cat. No: PV-9000, ZSGB-BIO).
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2

Immunofluorescence Analysis of Endothelial Markers

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The HUVECs were seeded into 24-well plates at a density of ~104 cells per well and cultured for two days in ECM. Next, the cells were washed and fixed in 4% paraformaldehyde at 4°C for 15 min, washed with 1× PBS, blocked with 5% bovine serum albumin for 30 min and then incubated with the primary antibody at room temperature for 60 min. The expression of CD31, CD146, and GRP-78 was detected using monoclonal rabbit anti-human antibodies (dilution, 1:100; ab180175, ab75769 and ab108615, respectively; Abcam, Cambridge, UK) CD105 was detected using a monoclonal mouse anti-human antibody (dilution, 1:100; ab11414, Abcam). The negative control samples were concurrently incubated with 1× PBS. The secondary antibodies were fluorescein isothiocyanate-conjugated goat anti-rabbit and goat anti-mouse (dilution, 1:50; ZF-0311 and ZF-0312, respectively; ZSGB-BIO, Beijing, China). The nuclei were stained using DAPI (dilution, 1:1,000). The samples were viewed under an Olympus BX51 fluorescence microscope (Olympus, Tokyo, Japan) and analyzed using Image-Pro Plus 6.0 software (IPP 6.0; Media Cybernetics Inc., Rockville, MD, USA).
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3

Nuclear Localization of ATF4 and CHOP

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The nuclear compartmentalization of ATF4 and CHOP was detected using immunofluorescence. After treating with 10 μM HA15 for 24 h, cells were fixed with 4% paraformaldehyde, then stained with a primary antibody ATF4 (60035, 1:200, Protein tech, Wuhan, China) or CHOP (15204, 1:200, Protein tech, Wuhan, China) overnight at 4°C. The next day, a FITC-tagged secondary antibody (ZF0311 or ZF0312, 1:1000, ZSGB-BIO, Beijing, China) and DAPI (C1002, Beyotime, Shanghai, China), were added. All images were captured using a Leica Application Suite X (LAS X) system on a Leica microscope (Leica TCS SP8, Wetzlar, Germany).
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4

Immunofluorescence Assay for BRCA1 and γH2AX

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The cells were fixed in 4% paraformaldehyde for 30 min at room temperature and lysed with 0.2% Triton-X-100 for 15 min. This was followed by the addition of 5% bovine serum albumin (ZLI-9027, ZSGB-BIO, Beijing, China) to the lysate and incubation for 30 min at 37°C. Rabbit monoclonal anti-human BRCA1 antibody (dilution, 1:1,000; A301-377; Bethyl Laboratories) and monoclonal antibody for histone H2A variant X (γH2AX; dilution, 1:100; 05–636-I; EMD Millipore, Billerica, MA, USA) were added to the mixture followed by incubation at 4°C overnight. Cell lysate with 0.01 mol/l phosphate-buffered saline instead of the primary antibody was used as a negative control. Fluorescence-labeled secondary antibodies (dilution, 1:4,000; ZF-0311, ZF-0316; ZSGB-BIO, Beijing, China) were added to the mixture, which was then incubated in the dark at room temperature for 30 min. The mixture was further incubated with DAPI solution at room temperature for 5 min and then mounted in Tris-buffered glycerol solution. The subcellular localization of the proteins was determined using confocal laser scanning microscopy at a magnification of ×12,50.
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5

Histological Analysis of Lung and Heart

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The rats were sacrificed after hemodynamic measurements, and the lung and heart were quickly harvested and fixed in situ via the trachea cannula with buffered 4% formaldehyde, and embedded in paraffin. The sections were cut into 4-5 μm slices and were stained with streptavidin peroxidase and hematoxylin and eosin (H&E). For immunohistochemistry, 4-5 μm-thick cryosections or PAMSCs were first blocked with 5% goat serum (ab7481; Abcam, Cambridge, UK) for 30 min. The sections were then incubated with proliferating cell nuclear antigen (PCNA) (ab18197, Abcam) and CD31 (ab28364; Abcam). Subsequently, the 3, 3′- diaminobenzidine (DAB) dye was added to visualize the antibodies, and following washing of the tissue sections with phosphate-buffered saline (PBS) solution, the sections were observed and photographed under a microscope. For immunofluorescence, the sections or cells were incubated with rabbit polyclonal to smooth muscle α-actin (α-SMA, ab5694) or a nonspecific IgG antibody for 1 h at room temperature, which was followed by 1-h incubation in the dark with florescence isothiocyanate–conjugated goat anti-rabbit secondary antibody (ZF-0311; ZSGB-Bio Co., Beijing, China). Fluorescent images were taken with a Nikon Eclipse 90i microscope. Cells were fixed and permeabilized in a 50%.
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6

Immunofluorescence Analysis of Echo 6 Infection

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For immunofluorescence analysis of Echo 6 infection, FCGRTKO, B2MKO, CD55KO and WT HEK293T cells were seeded onto coverslips in 24-well plates at a density of 10,000 cells per well overnight and infected by Echo 6 (MOI 10). Eight hours later, cells were fixed with 4% paraformaldehyde for 30 min and permeabilized with 0.2% Triton X-100 in PBS for 20 min. After blocking with 3% BSA, cells were incubated for 1 h with anti-Echo 6 primary antibody at a dilution of 1:200, followed by incubation with an Alex 488-labeled secondary antibody (Abcam, ab150113, 1:100 dilution). After DAPI staining for 1 h, samples were mounted on microscope slides. Images were taken with a Leica TCS-SP confocal microscope and processed using ZEN software.
For FcRn and CD55 staining, cells were stained by anti-FCGRT (Abcam, ab193148) or anti-CD55 (Abcam, ab33111) primary antibody at a dilution of 1:100. FITC-labeled anti-rabbit secondary antibody (ZSGB-BIO, ZF-0311, 1:100 dilution) and Alex 488-labeled anti-mouse secondary antibody (Abcam, ab150113, 1:100 dilution) were subsequently used, respectively.
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7

Comprehensive Antibody Validation Workflow

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Antibodies used and the sources are as follows: NFIB (ab186738, 1:1000 for WB), ORC1 (ab85830, 1:1000 for WB), CDC6 (ab188423, 1:1000 for WB), CDT1 (ab70829, 1:1000 for WB), MCM5 (ab76023, 1:1000 for WB), MCM6 (ab201683, 1:1000 for WB), MCM7 (ab52489, 1:1000 for WB), PCNA (ab29, 1:2000 for WB), H3 (ab1791, 1:2000 for WB) and BrdU (anti-CldU, ab6326) from Abcam; MCM2 (3619, 1:1000 for WB) from Cell Signaling Technology; ΟRC2 (sc-32734, 1:500 for WB), Geminin (sc-74456, 1:1000 for WB), POLD1 (sc-17776, 1:1000 for WB) and β-actin (sc-47778, 1:2000 for WB) from Santa Cruz Biotechnology; MCM4 (13043-1-AP, 1:1000 for WB), Cyclin E1 (11554-1-AP, 1:1000 for WB) and MCM3 (A1060, 1:1000 for WB) from Abclonal; NFIB (A303-566A, for CUT&Tag) and ORC1 (A301-892A, for CUT&Tag) from Bethyl Laboratories; c-myc-Tag (B1022, 1:2000 for WB), HA-Tag (B1021, 1:2000 for WB) and GAPDH (B1034, 1:2000 for WB) from Biodragon. FITC or TRITC-conjugated secondary antibodies (ZF-0311, ZF-0312, ZF-0316, ZF-0313, 1:100 for IF) from ZSGB-BIO.
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8

Immunohistochemical Analysis of TRAIL-MSCs

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After the imaging procedures, the solitary xenograft tumors were fixed in 4% buffered formalin. Hematoxylin and eosin (H&E) staining was performed on serial sections of 4 μm intervals for histological examination. The surface and inner samples from these samples were frozen and sectioned to detect TRAIL and EGFP expression, as previously described [28 (link)]. The sections were blocked with normal goat serum for 30 minutes (Zli-9021, ZSGB-BIO, Beijing) and then incubated simultaneously with a 1:100-diluted polyclonal rabbit anti-TRAIL primary antibody (AB2435, Abcam, U.S.A.) and a 1:20-diluted polyclonal mouse anti-EGFP primary antibody (AB16278, Abcam, U.S.A.). Our detection of TRAIL-MSCs was based on incubation with a FITC-conjugated goat anti-rabbit secondary antibody (ZF0311, ZSGB-BIO, Beijing) and a rhodamine-conjugated goat anti-mouse secondary antibody (ZF0313, ZSGB-BIO, Beijing).
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9

Immunohistochemical Analysis of Brain Tissues

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Brain tissues were fixed in paraformaldehyde, embedded, and cut into sections (5 μm thickness). Then tissue sections were dewaxed in xylene and rehydrated in graded alcohols. After that, sections were incubated with 0.3% hydrogen peroxide to inactivate endogenous peroxidase activity. Antigen retrieval was achieved by incubating with 0.1 M sodium citrate (pH 6.0). After blocking with goat serum (Cat# ZLI-9022; Zhong Shan-Golden Bridge Biological Technology CO., Ltd., Beijing, China) for 30 min, sections were incubated with primary antibodies against TPH (1 : 300; ab46200; Abcam), ERβ (1 : 200; ab3577; Abcam), and SERT (1 : 1000; ab44520; Abcam) at 4°C overnight. After washing with PBS, secondary antibodies of FITC tagged goat anti-rabbit IgG (1 : 100; ZF-0311, ZSGB-bio, Beijing) were added and incubated for 30 minutes in the dark. After rinsing with PBS for 3 times, the sections were analyzed on a laser scanning confocal microscope (LSM510, Zeiss, Jena, Germany). Three different visual fields were randomly selected for each target brain area of each slice for photographing. The fluorescence intensity was quantified using Image-Pro Plus 6.0 (Media Cybenetics, Silver Spring, USA).
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10

Immunofluorescence Staining of Myosin

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After fixed with 4% paraformaldehyde for 30 min, cells were permeabilized by 0.2% Trutib X-100 in PBS for 10 min. Blocked for 1 h with 3% BSA/PBS, cells were incubated with primary antibody (anti-myosin, 1:300, M4276, Sigma-Aldrich) overnight and then fluorescein-conjugated secondary antibody (ZF-0311, ZSGB-BIO, Beijing, China) at 1:100 for 1 h. Nuclei were stained with DAPI (62248, Thermo Scientific). Representative images from each slide were acquired by the inverted fluorescence microscope.
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