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P3xflag myc cmv 24

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The P3xFLAG-Myc-CMV-24 is a plasmid vector that can be used for the expression of recombinant proteins in mammalian cell lines. It contains a CMV promoter and a triple FLAG and c-Myc epitope tag sequence for the detection and purification of the expressed proteins.

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7 protocols using p3xflag myc cmv 24

1

MBD3 Sequence Amplification and Plasmid Construction

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The complete MBD3 sequence was amplified by RT–PCR using primers MBD3-all-F (5′-CGGAATTCCGATGGAGCGGAAGAGCCCGAGCG-3′) and MBD3-all-R (5′-GGGGTACCCCCTAGACGTGCTCCATCTCCGGGT-3′) from a cDNA library of PANC1 cells, then inserted into the expression Vector p3xFLAG-Myc-CMV-24 (Sigma, St. Louis, MO, USA). The sh-EGFP and sh-MBD3 plasmids were previously constructed in our laboratory (Sigma) and kept at the School of Basic Medical Sciences, Jiangsu University. Plasmids were transfected into colon cancer cells using Lipofectamine 2000 (Invitrogen) according to the manufacturer’s instructions. The specific sequences are shown in Table S2. Methods for generating retroviruses encoding reprogramming factors and further infecting NPCs were referred to a previous paper (Pontes et al., 2014).
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2

Cloning and Silencing of Oncogenes

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The entire Lin28B sequence was amplified with RT‐PCR using primers Lin28B‐all‐F, 5′‐CGGGGTACCAATGGCCGAAGGCGGGGCTA‐3′ and Lin28B‐all‐R, 5′‐CGCGGATCCTTATGTCTTTTTCCTTTTT‐3′ and then cloned into the expression vector p3xFLAG‐Myc‐CMV™‐24 (Sigma‐Aldrich, San Francisco, CA, USA). The Lin28B, TET3, PKCβ and KRAS short hairpin (sh)RNA oligos (Lin28B‐shRNA‐F, 5′‐CCGGGCAGGCATAATAAGCAAGTTACTCGAGTAACTTGCTTATTATGCCTGCTTTTTG‐3′; Lin28B‐shRNA‐R, 5′‐AATTCAAAAAGCAGGCATAATAAGCAAGTTACTCGAGTAACTTGCTTATTATGCCTGC‐3′; TET3‐shRNA‐F, 5′‐CCGGGAACCTTCTCTTGCGCTATTTCTCGAGAAATAGCGCAAGAGAAGGTTCTTTTTG‐3′; TET3‐shRNA‐R, 5′‐AATTCAAAAAGAACCTTCTCTTGCGCTATTTCTCGAGAAATAGCGCAAGAGAAGGTTC‐3′; sh‐PKCβ‐F, 5′‐CCGGCAAGTTTAAGATCCACACGTACTCGAGTACGTGTGGATCTTAAACTTGTTTTT‐3′; sh‐PKCβ‐R, 5′‐AATTCAAAAACAAGTTTAAGATCCACACGTACTCGAGTACGTGTGGATCTTAAACTTG‐3′; sh‐KRAS‐F, 5′‐CCGGCTATACATTAGTCCGAGAAATCTCGAGATTTCTCGGACTAATGTATAGTTTTTG‐3′; sh‐KRAS‐R, 5′‐AATTCAAAAACTATACATTAGTCCGAGAAATCTCGAGATTTCTCGGACTAATGTATAG‐3′) produced by Sangon Biotech Co. Ltd. (Shanghai, China), were first annealed into double strands and then cloned into pLKO.1‐puro or Tet‐on‐pLKO‐puro vector.
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3

MBD3 Overexpression and Knockdown

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The complete MBD3 sequence was amplified by RT–PCR using primers MBD3-all-F (5′-CGGAATTCCGATGGAGCGGAAGAGCCCGAGCG-3′) and MBD3-all-R (5′-GGGGTACCCCCTAGACGTGCTCCATCTCCGGGT-3′) from a cDNA library of PANC1 cells, then inserted into the expression Vector p3xFLAG-Myc-CMV-24 (Sigma). The MBD3 and EGFP shRNA oligos (MBD3-shRNA-F 5′-CCGGCGGCCTGAACGCCTTCGACATCTCGAGATGT CGAAGGCGTTCAGGCCGTTTTTG-3′, MBD3-shRNA-R 5′-AATTCAAAAACGGCCTGAACGCCTTCGACAT CTCGAGATGTCGAAGGCGTTCAGGCCG-3′, EGFP-shRNA-F 5′-CCGGTACAACAGCCACAACGTCTATCTCGAGATAGACGTTGTGGCTGTTGTATTTTTG-3′, EGFP-shRNA-R 5′-AATTCAAAAATACAACAGCCACAACGTCTATCTCGAGATAGACGTTGTGGCTGTTGTA-3′) were first annealed into double strands and then cloned into pLKO.1-puro (Sigma).
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4

Fluorescent Probes for Mitotic Kinase Dynamics

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GFP-tagged full-length MCAK was previously reported27 (link). Point mutations within MCAK were generated using a QuikChange Site-Directed Mutagenesis kit (Stratagene). The cDNA was amplified by PCR and subcloned into p3xFLAG-myc-CMV24 (Sigma), modified pcDNA-mCherry and pFastBac1 (Invitrogen) vectors. The design of the PLK1 sensor is based on a PKC sensor40 (link): an FHA2 phospho-Thr-binding domain and a substrate peptide (LLLDSTLSINWD from Myt1) were inserted into a CFP/YFP FRET pair. The sensor was generated with CENP-B fusion to target to centromeres. The Aurora B sensor (CENP-B fusion) and PLK1 sensor (Hec1 fusion) used in experiments for Fig. 6a were described in previous reports41 (link)42 (link). All plasmid constructs were confirmed by sequencing.
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5

LIN28A Overexpression and shRNA Knockdown

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The entire LIN28A sequence was amplified with RT-PCR using primers LIN28A-all-F and LIN28A-all-R (Table 1), and then cloned into the expression vector p3xFLAG-Myc-CMV™-24 (Sigma). The MeCP2, MBD3 and EGFP shRNA oligos (Table 1, Sangon Biotech., Shanghai) were firstly annealed into double strands and then cloned into pLKO.1-puro-vector (Sigma).
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6

Expression and Knockdown of MeCP2 Protein

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The entire MeCP2 sequence was amplified with RT-PCR using primers MeCP2-all (Table 1), and then cloned into the expression vector p3xFLAG-Myc-CMV™-24 (Sigma, E9283). The MeCP2, EGFP shRNA oligos (Table 1) were firstly annealed into double-strands and then cloned into pLKO.1-puro (Sigma, SHC005).

DNA and RNA nucleotide sequences.

MeCP2-FCAGCGTCTGCAAAGAGGAGA
MeCP2-RGCTCCTCTCTGTTTGGCCTT
MMP2-FCACAGGAGGAGAAGGCTGTG
MMP2-RGAGCTTGGGAAAGCCAGGAT
MMP9-FTTCAGGGAGACGCCCATTTC
MMP9-RTGTAGAGTCTCTCGCTGGGG
Furin-FCCAAAGACATCGGGAAACG
Furin-RTTAAACCCATCTGCGGAGTAG
GAPDH-FTGGGGAAGGTGAAGGTCGG
GAPDH-RCTGGAAGATGGTGATGGGA
TGFβR1-FCTGTGAAGCCTTGAGAGTAA
TGFβR1-RTGACTGAGTTGCGATAATGT
TGFβ2-FGTGAAGAACTAGAAGCAAGA
TGFβ2-RGCAATAACATTAGCAGGAGA
TGFβ3-FTCAAGAAGCAGAAGGATCAC
TGFβ3-RTGTCGGAAGTCAATGTAGAG
ChIP-PCR1-FACTAAACGGCCCATTGTTGTG
ChIP-PCR1-RACGTCACAGGATGGTGGTTAG
ChIP-PCR2-FATCCGACCCAAGATGTTGATAATG
ChIP-PCR2-RCTGGTCTCGCACTCCTGAC
ChIP-PCR3-FGTGGTCTCTGGCTTCCTATGGAC
ChIP-PCR3-RCTTCCGCCAGCTCCAGCTC
MeCP2-all-FCCGGAATTCAATGGTAGCTGGGATGTTAGG
MeCP2-all-RCGGGGTACCGCTAACTCTCTCGGTCACGG
shMeCP2-FCCGGGAGAGCGCAAAGACATTGTTTCTCGAGAAACAATGTCTTTGCGCTCTCTTTTTG
shMeCP2-RAATTCAAAAAGAGAGCGCAAAGACATTGTTTCTCGAGAAACAATGTCTTTGCGCTCTCG
shEGFP-FCCGGTACAACAGCCACAACGTCTATCTCGAGATAGACGTTGTGGCTGTTGTATTTTTG
shEGFP-RAATTCAAAAATACAACAGCCACAACGTCTATCTCGAGATAGACGTTGTGGCTGTTGTA
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7

Plasmid Construction and Characterization

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GFP, GFP-TFEB, GFP-BCL2, GFP-LC3, GFP-Htt-60Q, GFP-Htt-150Q, GFP-BCL2, FLAG, FLAG-BECN1, mCherry, mCherry-GFP-LC3B, GFP-GAggagca (GA∗30), GFP-GRggaaga (GR∗30), GFP-PRccaaga (PR∗30), Flag-GAggagca (GA∗30), Flag-GRggaaga (GR∗30) and mCherry-PRccccgg (PR∗46) plasmids were described previously11 (link),17 (link),20 , 21 (link), 22 (link), 23 (link), 24 (link). mCherry-LC3B was a gift from Dr. David Rubinsztein (Addgene plasmid #40827). pMRX-IP-GFP-LC3-RFP-LC3ΔG was a gift from Dr. Mizushima (Addgene plasmid #84572). ATG5-GFP, ATG9-GFP, DFCP1-GFP and ATG16-mCherry were kindly provided by Dr. Quanhong Ma (Soochow University, China). GABARAPL1 cDNA was first amplified using PCR from a human fetal brain cDNA library (Clontech) using the primers 5′-GAAGATCTACCATGAAGTTCGTGTAC-3′ and 5′-GCGTCGACTCACAGACCGTAGAC-3′. The PCR product was subsequently inserted into the p3xFLAG-Myc-CMV-24 (Sigma) vector at the Bgl II/Sal I sites.
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