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301 protocols using safire2

1

Platelet Activation and Eicosanoid Signaling

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; Elabscience Biotechnology Co., Ltd., Bethesda, MD, USA), interleukin (IL)-6 and IL-1β (EM004-96 and EM001-96, both from ExCell Bio Co., Ltd., Taicang, China) were determined by ELISA, according to the manufacturer's protocol. Expression levels were measured using a Tecan microplate reader (Safire2; Tecan, Männedorf, Switzerland).
Calcium mobilization assay. Blood was resuspended in Tyrode's buffer containing no calcium at a density of 3x10 8 platelets/ml, into which Fura2-AM was added (4 M final concentration) and the mixture was incubated at 37˚C for 30 min. Calcium mobilization was measured using a Tecan microplate reader (Safire2; Tecan). Thromboxane B2 (TXB2) assay. TXB2 was assayed using a commercial enzyme immunoassay kit according to the manufacturer's protocol (E-EL-M1144c, Elabscience Biotechnology Co., Ltd.) and measured using a Tecan microplate reader (Safire2; Tecan).
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2

Fatty Acid Binding to Human Serum Albumin

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Excitation scans and emission scans of human serum albumin fatty acid free (Cat# A3782) in phosphate buffered saline were obtained at 37°C using the Tecan Safire II42 . Myristic acid (Cat # M3128) at different molar concentrations were allowed to bind to human serum albumin and monitored via kinetic analysis mode at the emission wavelengths determined from previous experiment on the Tecan Safire II. After 10 minutes, APC was injected and monitored via kinetic analysis mode on the Tecan Safire II.
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3

Evaluating Cell Viability, Proliferation, and Cytotoxicity

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WST-1 assay (Roche Diagnostics) represents an easy-to-use method for evaluation of cell viability, proliferation, and cytotoxicity. The assay was performed in a 96-well microculture plate (Greiner Bio-One) according to manufacturer's instructions. Briefly, 1 × 105 RAW 264.7 cells were added to each well followed by addition of CdCl2 or additional hk S.E. to a final volume of 100 μL/well. After 24 h and 48 h 10 μL of the water soluble tetrazolium salt WST-1 (2-[4-iodophenyl]-3-[4-nitrophenyl]-5-[2,4-disulfophenyl]-2H-tetrazolium, monosodium salt) was added in each well. In case of viable cells the tetrazolium salt is reduced to formazan and leads, therefore, to a change of colour [27 (link)]. Following incubation of the cells with WST-1 reagent the absorbance of supernatants was measured at 437 nm using a conventional microplate reader (Tecan Safire2, Tecan).
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4

Cytotoxicity Evaluation of Compound 17 and Nitroxoline

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The possible cytotoxic effects of compound 17 and nitroxoline in the cell lines used were determined by MTS [3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymetoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium] colorimetric assay. U-87 MG (3 × 104 and 5 × 103 for 24 and 72 hours respectively), LPB-1 (1 × 105 and 2.5 × 103 for 24 and 72 h, respectively), U373 (3 × 104 cells for 72 h) cells and MSCs (3 × 104 for 72 h) were seeded into wells of a 96-well microplate and allowed to attach overnight. They were then treated with 100 μl of medium containing 1.25, 2.5 or 5 μM of inhibitor or DMSO (0.05%) and incubated for 24 or 72 h. 10 μl of MTS (Promega, Madison, WI, USA) was then added to the walls of a 96-well microplate and, after incubation, absorbance of formazan was measured at 490 nm on a Tecan Safire2™ (Tecan, Mannedorf, Switzerland). Cell viability (%) was expressed as the ratio of absorbance obtained in the presence of compounds to that in DMSO alone. All assays were performed in quadruplicate and repeated twice.
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5

Steady-State GTPase Activity Assay

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GTPase activity of cyt-DATL or cyt-hATL1 was measured under steady-state conditions (Fig. 3 C) using the EnzChek Phosphate Assay Kit (Molecular Probes; Thermo Fisher Scientific) on a TECAN Safire2 plate reader (Tecan). Purified cyt-DATL protein was desalted into SEC buffer (25 mM Tris-HCl, pH 7.5, 100 mM NaCl, 2 mM EGTA, 5 mM MgCl2, and 2 mM 2-ME) without magnesium. A standard reaction involved mixing 1 U/ml purine nucleoside phosphorylase (PNP), 0.2 mM 2-amino-6-mercapto-7-methylpurine riboside, 2 µM cyt-DATL, and 0.5 mM GTP in 50 mM Tris-HCl, pH 7.5, 100 mM NaCl, and 2 mM 2-ME in a total volume of 0.2 ml at 28°C. The reaction was started with the addition of 5 mM MgCl2. Therefore, buffers provided within the EnzChek kit were altered so that they did not contain any magnesium.
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Epirubicin Sensitivity Assay in Breast Cancer

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Cell viability was determined using a WST-1 assay kit (Roche Applied Science, Indianapolis, IN, USA). Scramble and GPR120 KD MCF-7 or T47-D cells were respectively seeded in 100 μl RPMI 1640 medium with 10% serum in 96-well flat bottom plates with cell density 8000 cells/well. After cell adhesion overnight, the medium was changed with 100 μl RPMI 1640 medium without serum, but containing 10 μM GW9508 or vehicle control. After 24 h of culture, the medium was changed with 100 μl new RPMI 1640 medium containing 10 μM GW9508 or vehicle control and different concentrations of epirubicin (0, 0.03, 0.125, 0.5, 2, and 8 μg/ml). After 48 h of epirubicin treatment, 10 μl of WST-1 reagent was added and plates were further incubated up to 2 h at 37 °C in 5% CO2. Then, the absorbance was read at 450 nm with a reference wavelength set at 690 nm using a plate reader (TECAN safire 2, TECAN, Männedorf, Switzerland).
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7

Quantifying Cellular Robustness in E. coli

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Culture samples were collected from bioreactors after 32 h of cultivation; a rotating disk shear device [52 (link)] was used to determine the relative robustness of E. coli cells [53 (link)]. 20 mL of cell broth were exposed for 20 s to a rotation speed of 233 revolutions per second in the device, which corresponds to an energy dissipation rate of 0.75 × 106 W/kg [52 (link)]. This represents the energy normally generated in high shear producing devices such as pumps and process scale centrifuges. Pre and post-shearing samples were centrifuged at 17,000×g for 10 min, the supernatants collected and frozen at −20 °C. The supernatants were thawed and the total protein content in sheared and non-sheared samples was measured via Bradford assay (Thermo Scientific, IL, USA) in 96 well plate at A 595 nm (Tecan Safire2, Tecan, Reading, UK).
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8

Comprehensive Characterization of Nanoparticles

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TEM images (HT7700, Hitachi, Tokyo, Japan) was used to observe the morphology and mesoporous structure of the nanoparticles. The nitrogen adsorption analysis analyzer BSD-1 (Beishide Instrument Technology Co., Ltd., Beijing, China) was used to measure the surface area and pore size distribution of the samples. The particle sizes and Zeta potentials were measured in pH 7.4 PBS with a Zetasizer Nano-ZS90 Nanosizer (Malvern Ltd., Leamington Spa, UK). The fluorescence spectrum of the GQDs was detected using a microplate reader (Tecan Safire 2, Tecan Ltd., Männedorf, Switzerland). The infrared spectrogram of the sample was measured using an Equinox 55 Fourier Transform Infrared Spectrometer (Bruker, Germany).
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9

Fluorescent Cell Viability and Neurite Analysis

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Relative cell viability and neurite outgrowth was measured using a Tecan Safire2 fluorescence plate reader (Tecan Group Ltd., Maennedorf, Switzerland) to detect the fluorescence intensity from each well, expressed in relative fluorescence units (RFU). Bottom-read fluorescence detection was performed using monochromator excitation/emission settings of 483/525 nm (12 nm bandwidths) for the green fluorescent Cell Viability Indicator and 554/567 nm (5 nm bandwidths) for the orange-red fluorescent Cell Membrane Stain. Cell-free controls were included and used for background subtraction. Unless stated otherwise, cell treatments were typically performed in triplicate, from which the mean ± SEM was plotted. Curve fitting was performed with GraphPad Prism (GraphPad Software, La Jolla, CA) using a nonlinear regression equation for variable slope sigmoidal dose-response to estimate 50% effective or inhibitory concentration (EC50 or IC50) values.
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10

MTT Cell Viability Assay Protocol

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The MMV-Luc cells were seeded and treated as described for reporter gene assay (RGA). After 48 hours of treatment, 20 µL of MTT labeling reagent (5mg/mL) was added into each well containing cells growing in 200 µL of medium and plates covered with aluminum foil. The plates were incubated for 4 hours at 37 °C in a humidified atmosphere (95%) with 5% CO2.
Thereafter, 100 µL of solubilisation solution (10% SDS in 0.01 M HCl) was added to each well and incubated overnight at 37 °C in a humidified atmosphere (95%) with 5% CO2. The plates were then read at 570 nm with a reference wavelength of 690 nm with TECAN Safire2 (TECAN, Switzerland) microtitre plate reader. Viability of the each test sample was calculated as the percentage (%) absorbance when compared with the absorbance of the 0.5% methanol vehicle control.
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