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Alexa fluor 594 goat anti rabbit antibody

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Alexa Fluor 594 goat anti-rabbit antibody is a secondary antibody conjugated with the Alexa Fluor 594 fluorescent dye. It is designed to detect and label rabbit primary antibodies in various immunological applications.

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35 protocols using alexa fluor 594 goat anti rabbit antibody

1

Organotypic Purkinje Cell Dendritic Arbor Imaging

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Organotypic slice cultures were prepared as previously described (8 (link)). The medium was changed every 2–3 days. For experiments using P/Q block, 100 nM ω-agatoxin IVA (Bachem) and 1 μM ω-conotoxin MVIIC (Bachem) were added from day 2 onwards (11 (link)). For ceramide treatment, 50 μM of C6-ceramide (N-hexanoyl-d-sphingosine) or its inactive form dihydroceramide C6 were added from day 2 onwards. At days-in vitro (DIV) 5–12, slice cultures were fixed in 4% paraformaldehyde followed by brief methanol permeabilization. Slices were blocked in PBS containing 0.3% Triton-X and 3% normal goat serum for 1 h at room temperature and incubated with rabbit anti-calbindin D-28K (Swant; 1:5000) for two nights at 4°C, followed by incubation with Alexa Fluor 594 goat anti-rabbit antibody (Invitrogen; 1:2000). For the quantification of Purkinje cell dendritic arbors, the size of the dendritic area was measured by tracing the outline of the dendritic tree using Axiovision 4.3 software (Zeiss) in a blinded manner. Cells were acquired from three independent experiments. Data were analyzed using GraphPad Prism. All data are represented as mean ± SEM. Statistical significance was assessed by one-way ANOVA followed by Bonferroni's multiple comparison test (*P< 0.05; **P< 0.01; ***P< 0.001).
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2

Histological Analysis of Skin Biopsies

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Standard histological paraformaldehyde fixation, paraffin embedding, and immunostaining were performed. Briefly, the skin biopsy samples were fixed in 4% paraformaldehyde for 24 h, and then embedded in paraffin. Sections of the skin (5 μm) were stained with hematoxylin-eosin (H&E) or toluidine blue to monitor the histological changes in the skin and recruitment of mast cell, respectively. Eosinophil peroxidase (EPX) staining was performed using a goat polyclonal anti–EPX antibody (Santa Cruz) and a ABC alkaline phosphatase staining system (Vector Laboratories) with 3,3′diaminobenzidine (DAB) as the staining substrate. NFκB/RelA staining within the skin tissue was performed using a rabbit monoclonal anti–NFκB/RelA antibody (Cell signaling technology) and Alexa Fluor 594 goat anti-rabbit antibody (Invitrogen). The nuclei within the tissues were counterstained using hematoxylin or 4′,6-diamidino-2-phenylindole (DAPI).
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3

Antibody Characterization for Cell Cycle Analysis

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Antibodies specific to Cdh1 (DH01), Aurora A, and Plk1 were purchased from Abcam (Cambridge, MA). Antibodies specific to cyclin A2 (sc-751), cyclin (sc-752), cyclin D (sc-753), cyclin E (sc-247), p27 (sc-528), and Cdc20 (sc-8358) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies specific to α-tubulin (DM1α) were purchased from Sigma-Aldrich. The Skp2 antibody (32-3300), Alexa Fluor 488 anti-mouse antibody (A21202), Alexa Fluor 488 anti-rabbit antibody (A21206), Alexa Fluor 647 anti-mouse antibody (A31571), Alexa Fluor 750 anti-rabbit antibody (A21039), Alex Fluor 680 anti-mouse antibody (A21057), Alexa Fluor 594 rabbit anti-mouse antibody (A11062), Alexa Fluor 488 chicken anti-rat antibody (A21470), Alexa Fluor 594 goat anti-rabbit antibody (A11037), and Alexa Fluor 594 goat anti-chicken (A11039) were purchased from Invitrogen. IRDye 800CW anti-mouse antibody (926-32210) and IRDye 680LT anti-rabbit antibody (926-68021) were purchased from LI-COR Biosciences (Lincoln, NE). Mouse anti-BrdU antibody (347580) was purchased from Becton Dickinson (San Jose, CA). Rat anti-BrdU antibody (OBT0030) was purchased from the Accurate Chemical & Scientific Corporation (Westbury, NY).
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4

Immunofluorescence Analysis of Mustn1 in 293T Cells

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293T (ATCC ref. CRL-3216) and Ad-293 (Agilent Technologies ref. 240,085) cells were grown in DMEM supplemented with 10% fetal bovine serum and 100 U/ml penicillin/streptomycin. For immunofluorescence experiments, 293T cells were grown on collagen-coated coverslips and transfected with 1 μg/ml plasmid DNA (expressing N- or C-terminally Flag-tagged, or untagged Mustn1) using 5 μg/ml polyethylenimine (PEI MAX, Polysciences ref. 24,765). 24 h after transfection, cells were fixed with 4% paraformaldehyde in 0.1M phosphate buffer (PBS) for 15 min, washed three times with PBS, permeabilized for 15 min (0.25% Triton X-100 in PBS), and incubated with blocking solution (10% goat normal serum in PBS) for 15 min, all at room temperature. Cells were then incubated with rabbit anti-Mustn1 antibody (Merck Millipore, ABD115, 1:500) overnight at 4 °C, washed three times with PBS, followed by incubation with AlexaFluor 594 goat anti-rabbit antibody (Invitrogen, A11037, 1:500) for 1 h at room temperature. Both primary and fluorophore-conjugated secondary antibodies were diluted in blocking solution. Cells were washed three times with PBS, counter-stained with DAPI and mounted on a microscopy slide using Vectashield for imaging. Images were captured using a Zeiss Axio Vert.A1 widefield fluorescence microscope with a LD Plan-Neofluar 40x/0.6 Korr M27 objective.
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5

Quantifying Amyloid Plaque Density in Mice

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Mice were anesthetized with sodium pentobarbital and perfused with 4% paraformaldehyde in 0.1 M phosphate buffer (PBS) after the probe trial. Brains were stored in 4% paraformaldehyde at 4 °C overnight then dehydrated in 30% phosphate-buffered sucrose solution for cryoprotection. Samples were preserved at − 80 °C and coronal sections of 20 µm were obtained by a cryostat (Leica Microsystems, Wetzlar, Germany). Sections were incubated overnight at 4 °C with the rabbit anti-GFAP (1:2000; Dako, Glostrup, Denmark) primary antibody, and sequentially incubated for 2 h with Alexa Fluor 594 goat anti-rabbit antibody at room temperature (1:500; Invitrogen, Eugene, OR, USA). Staining of β-Amyloid plaques was performed using Thioflavin S (ThS 0.002%, Sigma-Aldrich) to compare β-amyloid plaque density among different treatment groups. Sections were counterstained with 0.1 μg/ml Hoechst 33,258 (Sigma-Aldrich, St Louis, MO, USA) and rinsed afterwards with PBS 0.1 M [30 ]. ThS-stained β-amyloid plaques were visualized using a fluorescence microscope with a fluorescence filter (BX41 Laboratory Microscope, Melville, NY-Olympus America Inc). For each image, the proportion of total image area covered by fluorescently stained β-amyloid plaques was quantified. For each mouse, four fields per section with the highest density of plaques were chosen as representative and were averaged [31 (link)].
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6

Immunofluorescence Analysis of Mitotic Regulators

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Rabbit polyclonal anti‐gamma H2AX antibody (ab2893), rabbit monoclonal anti‐Cyclin B1 antibody (ab181593), mouse monoclonal anti‐CDK1 antibody (ab18), and sheep polyclonal anti‐BUBR1 antibody (ab28193) were from Abcam (Cambridge, UK). Rabbit polyclonal anti‐MAD2 antibody (10337‐1‐AP) and CoraLite594‐conjugated donkey anti‐Rabbit IgG (H + L) (SA00013‐8) were from Proteintech (Wuhan, China). Alexa Fluor 594 goat anti‐rabbit antibody, Alexa Fluor 488, and 594 goat anti‐sheep antibody were from Invitrogen (Carlsbad, CA). Rabbit polyclonal anti‐centromere (15‐234‐0001) was from Antibodies Incorporated (Shenzhen, China). Horseradish peroxidase‐conjugated goat anti‐rabbit/mouse IgG antibodies were from Beyotime (Nantong, China). Mouse monoclonal anti‐α‐tubulin‐FITC antibody (F2168), Hoechst 33342 (B2261) and all other unstated chemicals were from Sigma (St. Louis, MO).
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7

Immunofluorescence Staining of HepaRG Cells

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Immediately after the Raman measurements, the HepaRG cells were fixed with 4% paraformaldehyde for 20 min at room temperature (RT) and stored at 4 °C until further analysis. Cells were permeabilized with 0.1% Triton X-100 in PBS for 10 min and blocked with 4% bovine serum albumin (A2153; Sigma-Aldrich) for 1 h at RT. A primary antibody working solution containing mouse anti-CYP3A4 (1:1000; SAB5300118; Sigma-Aldrich) and rabbit anti-human cyt b5 (1:500; ab69801; Abcam) was prepared in 1% bovine serum albumin solution, applied to the cell samples, and incubated overnight at 4 °C. The following day, the samples were washed three times with PBS and then immersed in a secondary antibody solution containing Alexa Fluor 488 goat anti-mouse antibody (10 µg/mL; A11001; Invitrogen) and Alexa Fluor 594 goat anti-rabbit antibody (10 µg/mL; A11012; Invitrogen) for 1 h at RT. After washing with PBS three times, the cells were counterstained with 1 µM DAPI solution (D1306; Invitrogen) at RT. The cells were then washed twice with PBS, and the dishes were stored and protected from light at 4 °C until image acquisition. Fluorescent images were captured using a confocal laser scanning microscope (A1; Nikon).
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8

Labeling TRPV1 Antibodies for OSC Imaging

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Rabbit anti TRPV1 antibody (25 μg; Synaptic Systems, no. 444 003) were labeled with Alexa Fluor 555 Microscale Protein Labeling Kit (Thermo Fisher Scientific, no. A30007) according to the manufacturer’s description but using the recommended 10× dye/protein ratio to ensure labeling despite the presence of BSA. OSCs were incubated with labeled antibody (25 μg/ml) for 2 hours or, alternatively, unlabeled antibody (10 μg/ml) for 90 min followed by washing three times for 15 min (recording solution) and 90-min incubation with a 1:200 dilution of Alexa Fluor 594 goat-anti-rabbit antibody (Invitrogen, no. A-11012). Antibodies were all incubated in medium at 37°C under rotation, and nPDs were added 1 hour before the end of the incubation. Once nPDs had been added, the slices were kept in the incubator without agitation to favor nPD penetration in the tissue.
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9

Immunohistochemical Evaluation of Infarct Tissue

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For evaluation of inflammation, a mouse anti-rat CD68 (Millipore, Temecula CA) was used followed by an Alexa fluor 594 goat anti-mouse antibody (Invitrogen, Carlsbad, CA). For evaluation of angiogenesis, ECs were detected by a rabbit anti-rat Von Willebrand factor (vWF) antibody (US Abcam, Cambridge, MA) followed by an Alexa fluor 594 goat anti-rabbit antibody (Invitrogen Carlsbad, CA). Mural cells were detected by a FITC-conjugated anti-α- smooth muscle actin (α-SMA) monoclonal antibody (Sigma Aldrich, St. Louis, MO). Viable cardiomyocytes were detected by staining using a mouse anti-rat cardiac troponin I (cTnI) antibody (US Abcam, Cambridge, MA) followed by an Alexa fluor 488 goat anti-mouse antibody (Invitrogen, Carlsbad, CA). All slides were last counterstained with DAPI (Invitrogen, Carlsbad, CA).
For quantification, four to five slides from each group were utilized near the midsection level of the infarct tissue. The numbers of CD68-positive cells and vWF- and α-SMA-positive vessels were counted and reported per mm2 areas. The cTnI-positive fraction area in the infarct region was measured by NIS Elements AR software. Intensity of fluorescence was determined by ImageJ and normalized to the background value.
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10

Chk2 Inhibitor Assay Protocol

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The CHK2 inhibitor BML-277 was purchased from Merck and Millipore (USA). Rabbit polyclonal anti-CHK2 antibody, rabbit monoclonal anti-γ-H2A.X antibody and anti-MAP1LC3A antibody were purchased from Abcam (Cambridge, UK). Anti-α-tubulin-FITC antibody and Hoechst 33342 were purchased from Sigma (St. Louis, MO, USA). Alexa Fluor 488 goat anti-rabbit antibody and Alexa Fluor 594 goat anti-rabbit antibody were purchased from Invitrogen (Carlsbad, CA, USA).
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