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189 protocols using fibronectin

1

Fibronectin and Collagen I Degradation by Legumain

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Fibronectin and collagen I were coated to the bottom of 96-well plates and treated with or without legumain for 2 h. Then, protein samples were collected and subjected to western blotting with antibodies against Fibronectin (Santa Cruz Biotechnology) and collagen I (Abcam). To detect proteins extracted from cells, equivalent amounts of total protein from each lysate were loaded for western blotting to analyze the target protein level with the indicated antibody including anti-legumain and anti-β-actin (Santa Cruz Biotechnology) antibodies. An ECL chemiluminescence kit (Millipore, Billerica, MA) was used to detect the proteins.
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2

Western Blot Analysis of Extracellular Matrix Proteins

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After treatment, the cells were washed three times with pre-cooled PBS, and the total protein of cell lysates was extracted with RIPA buffer (Santa Cruz Biotech.). The specific protein was detected by Western blot analysis as previously described[13 (link)]. In brief, the cell lysates or S3 pellet in media were boiled and then electrophoresed in 12% SDS-PAGE acrylamide gels. They were then transferred onto nitrocellulose membranes (Bio-Rad) and incubated for 1 h in TBS-T containing 5% nonfat milk. The membranes were incubated overnight at 4°C with primary antibodies against fibronectin (Santa Cruz Biotech.), laminin β-1 (Santa Cruz Biotech.), Cav-1 (Santa Cruz Biotech.), and ERK phosphorylation (Cell Signaling). The membranes were washed three times in TBS-T and incubated for 1 h at room temperature with corresponding HRP-conjugated anti-rabbit or anti-mouse antibodies (Santa Cruz Biotech.). The membranes were developed with the SuperSignal West Pico HRP substrate kit (Pierce) and photographed on a Kodak 4000 image station (Carestream Molecular Imaging). To control sample loading and protein transfer, we stripped and reprobed the membranes with β-actin (Santa Cruz Biotech.) or total ERK (Cell Signaling) antibody.
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3

Mefunidone and PFD Modulate TGF-β1, TNF-α, and LPS Signaling

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NRK-49F cells were pretreated with Mefunidone (0.18mM) or PFD (2mM) for 1h and then stimulated with 10ng/ml of recombinant human TGF-β1 for 48h. HK-2 cells were pretreated with Mefunidone at different concentrations (0.06, 0.12, and 0.18mM) for 24h or inhibitors for 1–2h and then stimulated with 10ng/ml of recombinant human TNF-α for 15, 30, or 60min. Primary peritoneal macrophages were pretreated with Mefunidone (0.18mM) and different inhibitors for 1–2h and then stimulated with 250ng/ml of LPS for 15, 30, or 60min.
Whole proteins from kidneys or cells were collected as described previously [33 (link)]. Membranes were incubated overnight at 4°C with the following specific primary antibodies against α-SMA (1:2,500; Sigma), fibronectin (1:400; Santa Cruz Biotechnology, Dallas, TX), phosphor-ERK1/2 (1:1,000; Cell Signaling Technology, Danvers, MA), ERK1/2 (1:1,500; CST), phosphor-IκB (1:1,000; CST), IκB (1:1,000; CST), phosphor-STAT3 (Ser727, 1:1000; CST), STAT3 (1:1000; CST) or β-tublin (1:1,000; Santa Cruz).
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4

Western Blot Analysis of Apoptosis and EMT Markers

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Total protein was obtained from cells using RIPA lysis buffer (Beyotime, Haimen, China) containing 1% protease inhibitor Cocktail (Sigma‐Aldrich, St. Louis, MO). Equal quantities of protein were separated on a sodium dodecyl sulfate‐polyacrylamide gel and transferred onto a polyvinylidene fluoride membrane (Bio‐Rad, Hercules, CA). The membrane was blocked at room temperature for 2 h with 5% skimmed milk in Tris‐buffered saline with Tween 20, and then probed overnight at 4°C with primary antibodies against Bcl‐2, caspase‐3, cleaved caspase‐3, GAPDH (dilution 1: 1000; Cell Signaling Technology, Danvers, MA), fibronectin, vimentin (1: 200; Santa Cruz Biotechnology, Santa Cruz, CA), or cytokeratin (1: 1000; Dako, Carpinteria, CA). Subsequently, the membranes were exposed to horseradish peroxidase‐labeled IgG for 2 h, and the bands were visualized using a Bio‐Rad imaging system.
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5

Histological and Immunofluorescent Analysis of ECM

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The obtained native submandibular glands and dental pulp tissue were fixed in 4% paraformaldehyde overnight, dehydrated with graded ethanol, embedded in paraffin, and then sectioned at 5 μm. Hematoxylin and eosin (H&E) staining was performed to characterize the ECM histology and immunofluorescence staining was conducted to label some vital ECM proteins of both tissues, which included collagen type I alpha (COL1, mouse monoclonal to collagen I; Santa Cruz, United States), collagen type III alpha 1 (COL3, mouse monoclonal to collagen 3; Santa Cruz), and fibronectin (mouse monoclonal to fibronectin; Santa Cruz). For immunofluorescence, deparaffinized sections were blocked against non-specific binding using goat serum and then incubated with diluted primary antibodies (anti-COL1, 1:200; anti-COL3, 1:200; anti-fibronectin, 1:200) at 4°C overnight. Alexa Fluor 488 goat anti-mouse IgG (ABclonal, United States) was used as a secondary antibody to visualize components specific to the ECM and DAPI was used to label nuclei. The stained sections were observed under a fluorescence microscope (Olympus BX61, cellSens Standard software).
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Western Blot Analysis of Extracellular Matrix Proteins

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Cells were lysed on ice for 20 min using a lysis buffer and centrifuged at 14,000 ×g for 10 min at 4°C. For sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), samples were transferred onto nitrocellulose membranes and the membranes were blotted with appropriate primary antibodies at a dilution of 1:1000. The membranes were then treated with peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA). Bound antibodies were detected with Super Signal West Pico PLUS Chemiluminescent Substrate (ECL; Amersham, Arlington Heights, IL, USA) and developed with Kodak X-OMAT films (Kodak, New Haven, CT, USA). Primary antibodies used in this study were COL-1A (ab34710; Abcam, Cambridge, UK), α-SMA (ab5694; Abcam, Cambridge, UK), fibronectin (sc-69681; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), TGF-β (sc-130348; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), and GAPDH (ATGEN, Seongnam-si, Gyeonggi-do, South Korea) antibodies.
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7

Protein Expression Analysis by Western Blot

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Total protein was extracted from cultured cells and analyzed as previously described 27 (link), 28 (link). A total of 50 μg of protein extracts were loaded to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to PVDF membranes (Millipore, USA). After incubated with the primary antibodies overnight at 4 ℃ and then with HRP conjugated secondary antibodies (Promega, USA) for 1 h at room temperature, the membranes were subjected to the ECL chemiluminescence system (Pierce, USA). All of the experiments were repeated thrice. Primary antibodies used: CBX8 from Sigma Aldrich; Snail, Slug and Vimentin from BD Biosciences; E-cadherin and N-cadherin from Cell Signaling Technology; CBX6, Fibronectin and GAPDH from Santa Cruz.
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8

Epithelial-Mesenchymal Transition Pathway

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Recombinant human TGF-β1 and LiCl were purchased from Sigma-Aldrich (St Louis, Mo, USA). The DMEM-F12 medium and fetal bovine serum (FBS), were supplied by Gibco (BRL Grand Island, NY, USA). Akt1, Akt2, Akt3, p-Akt (Thr308), p-Akt (Ser473), GSK3β (glycogen synthase kinase-3β), p-GSK3β, p-Smad3 and E-cadherin were purchased from Cell Signaling Technology (Beverly, MA). Collagen 1, α-SMA and Snail were obtained from Abcam (Cambridge, UK). TGF-β1, β-catenin, fibronectin, Vimentin and GAPDH were purchased from Santa Cruz Biotechnology (Santa Cruz, CA).
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9

Western Blot Analysis of Cellular Markers

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Cells were washed with cold PBS, scraped into RIPA buffer and centrifuged. The cell lysates were subjected to 10% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) hybridization transfer membrane. The primary antibodies used were as follows: HA (Sc-7392, Santa Cruze), CD44 (15675-1-AP, ProteinTech group), Fibronectin (sc-8422, Santa Cruze), Vimentin (5741, Cell Signaling Technology), p21cip1 (sc-6246, Santa Cruze), p27kip2 (sc-1641, Santa Cruze) and β-actin (Sc-47778, Santa Cruze). Secondary staining and detection were carried out in accordance with standard protocols16 (link), 64 (link).
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10

Molecular Mechanisms in Cancer Cell Signaling

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2HF (purity ~99%), MTT, Horseradish peroxidase (HRP)-conjugated anti-mouse and anti-rabbit secondary antibodies were purchased from Sigma-Aldrich (St. Louis, MO). Antibodies against KRAS, pERK (T202/204), pSTAT3 (Y705), CD31, Ki67, cyclin B1, CDK4, Bcl2, survivin, Bim, Bax, vimentin, fibronectin, and E-cadherin were purchased from Santa Cruz Biotechnology (Columbus, OH) and Cell Signaling Technologies (Danvers, MA). CellTiter-Glo was procured from Promega (Madison, WI). The avidin/biotin complex detection kit was procured from Vector (Burlingame, CA). The universal Mycoplasma detection kit was purchased from American Type Culture Collection (ATCC; Manassas, VA). The RLIP antibodies and antisense were obtained as previously described [19 (link),23 (link)]. D-luciferin was purchased from Goldbio (St. Louis, MO). AlamarBlue® was purchased from Thermo Fisher Scientific (Hanover Park, IL). The cell invasion assay kit was purchased from Cell Biolabs, Inc. (San Diego, CA).
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