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157 protocols using chemiluminescence reagent

1

Western Blot Analysis of Phospho-ETS1

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The protocol used for western blot has been previously described in detail [47 (link)]. In brief, Cell lysates were prepared with RIPA buffer (150 mM NaCl, 20 mM Tris-Cl pH7.5, 1% Triton X-100, 1% NP40, 0.1% SDS, 0.5% deoxycholate) containing freshly added proteinase and phosphatase inhibitors (Bionovas, Toronto, Canada). Protein concentrations were measured with the Bradford method. Each sample (100 μg) was subjected to electrophoresis in 10% SDS-polyacrylamide gels and subsequently transferred onto nitrocellulose membranes. All experiments were conducted using commercially available antibodies and corresponding horseradish peroxidase-conjugated antibodies (Santa Cruz Biotechnology). The specific rabbit polyclonal antibody against phospho-ETS1-Thr265, Ser269 was produced by ABclonal (Woburn, MA, USA) using the following immunogen: CDRL(Tp)QSW(Sp)SQSS (phospho-ETS1-Thr265, Ser269). After immunization for five times in two months, the antibodies were purified by antigen affinity chromatography. Chemiluminescence reagents were obtained from Millipore. The signal intensity of the autoradiograms was quantified using the ImageJ software (https://imagej.nih.gov/ij/) after normalization for the corresponding actin intensity. The antibodies used for western blot are shown in Supplementary Table 2.
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2

Protein Expression and Analysis

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Cells were split by radio immunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China) add with protease inhibitor (Pierce, Rockford, IL, USA). After centrifugation removal cell debris, add 1/4 volume of lysis buffer to the lysates, and then boiling 10 min in water. The total protein sample was pointed into and separated in the SDS-polyacrylamide gel. Then transferred it into a PVDF membrane (Millipore, Boston, MA, USA). Next, the membrane was blocked in 5% defatted milk for 2 h. After that, the membrane was incubated with primary antibodies at 4 °C overnight followed by a secondary antibody at room temperature for 1.5 h. Protein bands were exposure by chemiluminescence reagents (Millipore) and quantified using the Image Lab Image Document. Antibodies PPARγ, ATGL (Cell Signaling, Boston, MA, USA), KLF9 (Abcom, Cambridge, UK), aP2, FAS, cyclin B, cyclin D, cyclin E, p27, ZEB1 (Santa Cruz, Dallas, TX, USA), GAPDH (Boster, Wuhan, China), β-tublin (Sungene Biotech, Tianjin, China) were used.
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3

Western Blot Protein Quantification

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Whole-cell extracts were prepared with RIPA buffer (50 mM Tris–HCl pH7.4, 1% NP-40, 0.5% Sodium deoxycholate, 0.1% SDS, 150 mM NaCl, 2 mM EDTA, 50 mM NaF). Protein concentrations of the cell lysates were determined by the Bradford assay. The lysates were separated on a 10% polyacrylamide gel and then transferred to the PVDF membrane. The membrane was blocked for 1 h with 3% BSA in PBST. The membrane was then incubated overnight with primary antibodies. Appropriate horseradish peroxidase-associated secondary antibodies (Millipore) were applied, and the membranes were incubated at room temperature (RT) for 1 h. The protein bands were subsequently visualized with chemiluminescence reagents (Millipore) and detected on a BioSpectrum 600 Imaging system (UVP). The protein level was quantified from band intensity using Gel-Pro analyzer 3.1 (Media Cybernetics).
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4

Western Blot Analysis of Inflammatory Markers

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Western blot was performed as previously described.22 Total proteins (20 μg) were subjected to SDS‐PAGE and then transferred onto a polyvinyl indene difluoride membrane (PVDF; Millipore, Billerica, MA, USA). Nonspecific binding was blocked with PBST (0.5% Tween 20 in PBS) containing 5% non‐fat milk (Shandong Sparkjade Biotechnology Co., Ltd.) for 1 h at room temperature. The membranes were then incubated overnight at 4°C with individual primary antibodies in PBST containing 1% non‐fat milk (mouse anti‐IL‐6, rabbit anti‐TNF‐α, rabbit anti‐IL‐1β, rabbit anti‐GFAP, 1:1000, Abcam; mouse anti‐GFAP, rabbit anti‐pSTAT3, mouse anti‐STAT3, rabbit anti‐JAK‐1, rabbit anti‐JAK‐2, 1:1000, Cell Signaling Technology, rabbit anti‐β‐actin, Biosynthesis Biotechnology Inc., Beijing, China). Following three washes with PBST, the membranes were then incubated with the secondary antibodies (HRP‐linked anti‐rabbit IgG; HRP‐linked anti‐mouse IgG; 1:2000; Cell Signaling Technology). Then, the proteins were detected by chemiluminescence reagents (Millipore) and observed using a ChemiDoc™ XRS+ Imaging System (Bio‐RAD, Hercules, USA). The protein levels were quantified by densitometry using Image J 1.4.3.67.
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5

Protein Expression Analysis in HUVECs

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The pretreated HUVECs were washed by pre-cooling PBS three times, and the proteins were extracted by RIPA lysis containing 1% PMSF (Solarbio, Beijing, China). The concentration of proteins was measured according to the BCA protein assay kit (Solarbio, Beijing, China). The proteins were boiled for 5 min in SDS-PAGE loading buffer, and 30 μg of proteins was loaded to each lane and separated by 12% SDS-PAGE gels and transferred onto polyvinylidene fluoride (PVDF; Millipore, Billerica, MA, USA) membranes. The membranes were blocked by 5% non-fat milk for 1 h and then immersed in primary antibodies overnight at 4 °C; the primary antibodies are as follows: rabbit anti-GAPDH (1:10000; Proteintech, Chicago, IN, USA), rabbit anti-PLGF (1:1000; Abcam, Cambridge, UK), rabbit anti-SCF (1:10000; Abcam), and rabbit anti-VEGFR2 (1:1000; Cell Signaling Technology, USA). The membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (1:10000; Proteintech) for 1 h. Chemiluminescence reagents (Millipore) were used for the development of band visualization. ImageJ software was used to analyzed the protein expression levels.
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6

Western Blot Analysis of Apoptosis Markers

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The cells were suspended in cold lysis buffer (10 mM Tris, pH 7.5, 1 mM EDTA, 420 mM NaCl, 10% glycerol, 0.5% NP-40 containing proteases inhibitor, and 1 mM DTT) and incubated on ice for 15 min. After that, the cell lysates were hardly centrifuged for 10 min at 4 °C, and the supernatants were collected and boiled in protein sample buffer (0.7 M β-mercaptoethanol, 4% SDS, 0.17 M Tris, pH 6.8, 0.17 mg/mL bromophenol blue, and 10% glycerol). The boiled samples were analyzed by SDS polyacrylamide gels. The resolved proteins were transferred onto the nitrocellulose membrane. The membranes were blocked in 1% milk in PBST buffer (PBS with 0.05% Tween 20) for 30 min and incubated with primary antibody for 2 h at RT. The membranes were washed three times by PBST buffer with 0.5% milk and then incubated with appropriate HRP-linked secondary antibody for 1 h at RT. After washing, the bound antibodies were detected by chemiluminescence reagents (Millipore, Burlington, MA, USA). The primary antibodies used are as follows: PARP (#9542; Cell signaling, Danvers, MA, USA), caspase 3 (#9662; Cell signaling), GRP78 (#3177; Cell signaling), IRE1a (#3294; Cell signaling), PERK (#5683; Cell signaling), CHOP (#2895; Cell signaling), GAPDH (#2118; Cell signaling), and beta-actin (NB600-501, Novus Biologicals, Littleton, CO, USA).
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7

Protein Extraction and Western Blot Analysis

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Total protein from each sample from retinas was extracted using radioimmunoprecipitation assay (RIPA) buffer (Solarbio Science, Beijing, China). The bicinchoninic acid (BCA) method was used to determine the protein concentrations (ThermoFisher). A total of 50 μg of each sample was electrophoresed (80 V) and subsequently transferred (at 4°C, 350 mA) to polyvinylidene difluoride membranes. The membranes were incubated with primary antibodies [p-PI3K (1:2000; mouse; Cat# sc-12929; Santa Cruz Biotechnology Inc.), phospho-Akt 1/2/3 (1:2000; mouse; Cat# sc-101629; Santa Cruz Biotechnology Inc.), and vascular endothelial growth factor (1:2000; mouse; Cat# sc-365578; Santa Cruz Biotechnology Inc.)] for 16 hours at 4°C after blocking with 5% non-fat milk. The membranes were then incubated with horseradish peroxidase-labeled goat anti-mouse IgG(H+L) (1:2000; Cat# ZB-5305; Zhongshan Jinqiao Biotechnology Co. Ltd.) for 1 hour at room temperature. Chemiluminescence reagents (Millipore, Waltham, MA, USA) and an imaging system (GE AI680, Boston, MA, USA) were used to visualize the bands. ImageJ (National Institutes of Health, Bethesda, MD, USA) was used to calculate gray value.
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8

Western Blot Protocol for Protein Detection

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Cells were collected after 5% trypsinization of the culture plate, followed by centrifuging at 12,000 rpm at 4 °C for 10 min. Cell pellets were resuspended in RIPA buffer containing protease inhibitor cocktail and phosphatase inhibitor sodium orthovanadate (Santa Cruz Biotechnology Inc., Dallas, TX, USA) on ice for 30 min with vortex every 10 min. Protein concentrations were measured using a Bio-Rad Protein Assay (Bio-Rad Laboratories, Hercules, CA, USA). An amount of 20 µg proteins from each sample were subjected to SDS-PAGE and transferred onto nitrocellulose membranes (PerkinElmer, Waltham, MA, USA). Membranes were blocked with 5% bovine serum albumin (BSA, Sigma-Aldrich). To detect target proteins, membranes were probed with specific primary antibodies overnight. The next day, membranes were washed for 10 min with TBS-T 3 times, followed by incubation with anti-rabbit or anti-mouse secondary antibodies. Protein bands were detected using chemiluminescence reagents (Millipore, Billerica, MA, USA).
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9

Quantitative Western Blot Analysis

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Equal quantities of protein were analysed via 8 to 15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to poly (vinylidene difluoride) membranes. After incubation at 4 °C with primary antibodies against MMP1 (Proteintech Group, Rosemont, IL, USA), p-p38, p38, Bax, Cytochrome c and GAPDH (Cell Signalling Technologies, Boston, MA, USA) overnight, the blots were washed, exposed to corresponding HRP-conjugated secondary antibodies for 1 h, and finally detected by chemiluminescence reagents (Millipore, Billerica, MA, USA).
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10

CK2α Protein Extraction and Western Blot

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The mixture of protease and phosphatase inhibitors (50 mM Tris-HCl, pH 7.5, 1% Triton X-100, 150 mM NaCl, 1 mM NaF, 1 mM Na3VO4, 10 mM sodium pyrophosphate, 1 mM phenylmethylsulfonyl fluoride, 1 lg/ml aprotinin and 1 lg/ml leupeptin) were useing for protein extracts. Extracted protein should be centrifugated at 14,000 g to remove debris. Denatured proteins in the samples were subjected to 10% SDS-PAGE. Anti-CK2α polyclonal antibody (1:1500 dilution) and phosphate-buffered serum (PBS:5% milk +0.05% Tween-20) was using for blocking at 25°C room temperature overnight. GAPDH (Sigma, 1:1500 dilution) was used as an internal control. Subsequently, goat anti-rabbit antibody (1:5000 dilution) was using for incubation for 1 hour at 25°C room temperature. Targeted proteins was enhanced with chemiluminescence reagents (Millipore). All experiments were conducted three times independently.
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