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7 protocols using prl tk renilla control vector

1

Wnt Signaling Pathway Activation Assay

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Gastric organoids were dismantled by TrypLE Express. A total of 2.5 × 105 cells were transfected with TOPFlash plasmid (Merck-Millipore) together with pRL-TK renilla control vector (Promega) using 4D-Nucleofector system (Lonza). Transfected cells were suspended in Matrigel and plated onto a 48-well multiple-well plate and incubated for 72 hours. The cells were then lysed, and luciferase activity was measured using Dual luciferase reporter assay kit (Promega).
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2

Dual Luciferase Assay for Chondrosarcoma and Adenocarcinoma

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SW1353 human chondrosarcoma cells (ATCC) were seeded at a density of 1.75 x 104 cells per well in a 48-well plate 24 hours prior to transfection. MDA-MB-231 human adenocarcinoma cells (ATCC) were seeded at a density of 2.5 x 104 cells per well in a 48-well plate 48 hours prior to transfection. SW1353 and MDA-MB-231 cells were co-transfected with 500 ng of the appropriate pGL3-promoter vector and 30 ng of pRL-TK Renilla control vector (Promega) using TurboFect transfection reagent (Thermo Scientific). After 24 hours, cells were lysed and luciferase and Renilla activity measured using the Dual Luciferase Assay System (Promega) according to the manufacturers’ protocol. For each construct, six wells were transfected and at least six independent experiments performed per cell line. The luciferase/renilla ratio of each construct was normalised to the empty pGL3-promoter vector, which was given a ratio of 1. The significance of expression differences were assessed using a Mann-Whitney U test.
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3

Investigating miR-23a-3p Regulation of E-cadherin

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DU145 cells were seeded at a concentration of 5 × 104 cells per well in 6-well cell culture plates. After 24 h of incubation, cells were co-transfected with an miR-23a-3p mimic or negative control and vector containing the E-cad 3′UTR. The pRL-TK Renilla control vector (0.5 μg) (Promega) was also co-transfected as an internal control for transfection efficiency. GenMuteTM siRNA & DNA Transfection Reagent (SignaGen Laboratories, Ijamsville, MD) was used for this transfection process according to the manufacturer's instructions. Cells were harvested 48 h after transfection and analyzed for luciferase activity using the Dual-Luciferase Reporter Assay System (Promega).
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4

Characterizing Cbx4 Enhancer Regulation

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To make the pGl3-Cbx4-luc plasmid, a 2.4-kb Cbx4 enhancer region (−5,954/−3,523 bp upstream of the Cbx4 transcription start site) was PCR amplified from genomic DNA and cloned into the Luciferase reporter plasmid pGl3 promoter (Promega) at BamHI–SalI sites using the In-Fusion HD Cloning System (Takara Bio Inc.). For the reporter assay, HaCaT cells were seeded into white-bottomed/white-walled 96-well plates at 10,000 cells/well, and transfections were performed after overnight incubation at 37°C. Cells were transfected with 200 ng DNA total plus 10 ng pRLTK Renilla Control vector (Promega): 100 ng pGl3-Cbx4-luc and 100 ng pΔNp63 or empty pFLAG-CMV2 vectors. After 48 h of incubation at 37°C, cells were washed with PBS, and the assay was performed using the Dual-Glo Luciferase Assay System (Promega) according to the manufacturer’s protocol. Firefly luciferase activity was normalized against the Renilla luciferase activity, and the data represent three independent triplicates.
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5

Methylation-dependent Igfbp2 Promoter Activity

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The murine AML12 cell line (ATCC® CRL-2254™) was cultured in a 1:1 mixture of Dulbecco’s modified Eagle’s medium and Ham’s F12 medium (PAN-Biotech, Germany) with 0.005 mg/ml insulin (Roche Life Science, USA), 0.005 mg/ml transferrin (Sigma-Aldrich, USA), 5 ng/ml selenium (Sigma-Aldrich, USA) and 40 ng/ml dexamethasone (Sigma-Aldrich, USA) supplemented with 10% fetal bovine serum (Biochrom, Germany). Cells were maintained in humidified air replenished with 5% CO2. In a 48-well plate, 4 × 104 AML12 cells/well were co-transfected using Lipofectamine®2000 (Invitrogen, USA) with 500 ng/well unmethylated or methylated pCpGL-Igfbp2 and 5 ng/well pRL-TK Renilla control vector (Promega, USA). After 48 h, cells were harvested and analyzed for firefly and renilla luciferase activity using the dual-luciferase reporter assay system (Promega, USA). Firefly luciferase activity was normalized to its renilla luciferase transfection control.
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6

G9a 3'UTR Luciferase Assay

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The 3′UTR of G9a was cloned into the pMIR-REPORTTM miRNA Expression Reporter Vector (Ambion, Austin, TX, USA). 293T cells were co-transfected with the miR-122 mimic or negative control and G9a 3′UTR reporter, as well as the pRL-TK Renilla control vector (0.1 μg) (Promega, Madison, WI, USA) as an internal control for the transfection efficiency. GenMuteTM small interfering (si)RNA and DNA Transfection Reagent (SignaGen Laboratories, Ijamsville, MD, USA) were used for this transfection process according to the manufacturer’s instructions. Cells were harvested at 48 h after transfection and analyzed for luciferase activity using the Dual-Glo Luciferase Reporter Assay System (Promega).
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7

Luciferase Assay for MMP-2 Promoter Activity

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The MMP-2 promoter was inserted into the pGL3-basic vector (Promega, Madison, WI, USA) to generate the MMP-2 promoter/reporter plasmid. SPOCK1-depleted or control ccRCC cells were seeded at a concentration of 5 × 104 cells/well in six-well cell culture plates. Cells were then cotransfected with 1 μg of the pGL3-basic or MMP-2 promoter construct and 0.5 μg of the pRL-TK Renilla control vector (Promega) using the Lipofectamine 3000 Transfection Reagent. Firefly and Renilla luciferase activities were evaluated using a dual-luciferase reporter (DLR) assay kit (Promega). Firefly luciferase activity was adjusted to Renilla luciferase activity to control for variations in cell viability and transfection efficiency.
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