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26 protocols using cxcl9

1

Cytokine Profiling in Murine Lung Fluids

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Pleural wash (diluted 1:4) or bronchoalveolar (diluted 1:4) fluids collected from individual mice were assayed for cytokine content by enzyme-linked immunosorbent assay (ELISA) in duplicate. These assays were performed according to the manufacturers’ recommendations, using the following kits, IFN-γ, CCL2, IL-4, IL-6 (eBiosciences SAS, France), CCL11 (Peprotech, France) and CXCL9 (R&D, UK). Results are shown as pg/mL. Detection limits were 4 pg/ml for IL-4 and IL-6, 15 pg/ml for INF-γ, CCL2 and CXCL9 and 30 pg/ml for CCL11.
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2

Serum Biomarker Quantification Protocol

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Serum CXCL9, CCL5, ENA-78, M-CSF, and PDGF-BB levels were evaluated using commercial ELISA kits (CXCL9, CCL5, ENA-78, M-CSF, and PDGF-BB; R&D Systems, Minneapolis, MN, USA) according to the manufacturer's protocols [23 (link)].
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3

Induced Sputum Biomarkers Analysis

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Selected biomarkers in induced sputum supernatant were analysed using Luminex technology or ELISA. The following analytes were measured using Luminex technology kits (R&D Systems, Abingdon, UK) as per manufacturer's instructions, the lower limit of detection for each analyte shown in brackets: CXCL8 (0.11 pg/mL), CXCL10 (0.04 pg/mL), CXCL11 (0.14 pg/mL), CCL2 (0.08 pg/mL), CCL4 (0.23 pg/mL), CCL5 (0.59 pg/mL), IL-1β (0.11 pg/mL) and IL-6 (0.10 pg/mL). The remaining analytes were measured using ELISA as per manufacturer's instructions: CXCL9 (1.37 pg/mL, R&D Systems, UK), ECP (0.05 ng/mL, Aviscera Bioscience, Santa Clara, USA), NE (1.98 pg/mL, eBioscience, Hatfield, UK) and α2 macroglobulin (2 ng/mL, Abcam, Cambridge, UK).
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4

CD4+ T Cell Migration Assay

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CD4+ T cell trafficking was assessed as previously described [28 (link)]. In brief, WT and Cat Z−/− CD4+ T cells were isolated from spleens of WT and Cat Z−/− mice using the EasySep Mouse CD4+ T Cell Enrichment Kit (StemCell Technologies), according to the manufacturer’s instructions. 3 × 105 CD4 + T cells were transferred to the upper filter of a 5 μm Transwell support plate (Corning) pre-coated overnight with 3 μg/ml ICAM-Fc (R&D Systems). T cells were allowed to settle for 30 minutes before the upper filter was exposed to the bottom chamber containing vehicle (PBS) or 1 μg/ml CXCL9 (R&D Systems), followed by an incubation period of 1 h at 37 °C. The absolute numbers of cells that migrated through the Transwell filter were enumerated with a hemocytometer.
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5

Immune Cell Migration Assay

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RPMI-1640 medium containing 10% fetal calf serum was routinely used for primary cell cultures. KnockOut Serum Replacement (Thermo Fisher, Waltham, MA, USA) was used for all migration assays involving S1P. Anti-CD4-PE-Cy7 (GK1.5), anti-CD4-FITC (RM4–5), anti-CD8-PE (53-6.7), anti-CD8-PECF594 (53-6.7), anti-CD69 PerCP-Cy5.5 (H1.2F3), anti-CD44-PE (IM7), anti-CD62L-APC (MEL-14), and anti-p-Stat3-Percp cy5 were purchased from BD PharMingen (San Diego, CA, USA). Anti-CCR2-PE-Cy7 (SA203G11), anti-CD45.2-FITC (104), anti-CD45.1-APC (A20), anti-Qa-2-biotin (695H1-9-9), anti-Qa-2-Alexa Fluor 647 (695H1-9-9), anti-Ki67-PE-Cy7, anti-CXCR3-APC, and anti-CXCR6-PE were purchased from BioLegend (San Diego, CA, USA). Anti-CCR2-APC (Catalog # FAB5538A) and anti-S1P1-PE (Catalog # FAB7089P) were purchased from R&D Systems (Minneapolis, MN, USA). Unlabeled antibodies against Akt, p-Akt (Ser473), STAT3, p-STAT3 (Tyr705), FoxO1 (C29H4), and β-actin were purchased from Cell Signaling Technology (Beverly, MA, USA). Recombinant mouse CCL2, CXCL9, and CXCL16 were purchased from R&D Systems (Minneapolis, MN, USA). Stat3 inhibitor Stattic was purchased from Selleck.
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6

Chemotaxis Migration Assay with Matrigel

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Matrigel was diluted 1:4 in NK media. 50μL of this mixture was plated on the underside of a 5μm pore transwell insert (Corning, cat#CLS421). This was allowed to solidify for 20 minutes at room temperature. 2×105 cells in 200μL media were plated in the top well of the plate. 100ng/mL CXCL9 (R&D systems, cat# 392-MG) was added to 400μL media plated in the lower well of the plate. The cells were allowed to migrate for 24 hours and the number of cells in the bottom well was counted using a hemocytometer.
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7

Multicolor Flow Cytometry Panel

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The following Abs were used on a LSR II (BD Biosciences, San Jose, CA): allophycocyanin (APC)-Cy7- and APC-labeled anti-CD4, eFluor 650NC- and FITC-labeled anti-CD8, eFluor450-labeled anti-CD3, eFluor 650NC-labeled anti-MHCII, PE and PE-Cy7-labeled Thy1.2, PerCP-labeled Thy1.1, and PerCP-Cy5.5 and APC-labeled anti-CXCR3 (eBioscience, San Diego, CA). CXCR3-173 (anti-CXCR3 neutralizing antibody) (Biolegend, San Diego, CA), 145-2C11 (anti-CD3), 2.43 (anti-CD8), and XMG1.2 (anti-IFN-γ) (BIO X Cell, West Lebanon, NH) were used in vivo. The following were assessed by ELISA: IL-10, IL-17A, IFN-γ (BD Biosciences), CXCL9 (R&D Systems, Minneapolis, MN) and CXCL10 (eBioscience).
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8

Serum Cytokine and Chemokine Profiling

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ELISA kits were used to determine the levels of serum IL-21 (Creative Diagnostics, NY, USA), IL-18 (MBL, Nagoya, Japan), CCL20, CXCL9 (R&D, Minneapolis, USA), CCR6 (CUSABIO, Hubei, China), and CXCR3 (Cloud-clone, Houston, TX, USA), according to the manufacturer’s instructions.
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9

NK Cell Migration Assay

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Transwell assays were performed to determine the migration ability of NK cells through 3‐µm transwell filters (Corning, USA; Cat #3415) from the upper chambers to the medium in the lower chambers, with treatments of interest. Briefly, peripheral NK cells (CD3CD56+) were isolated from PBMCs using FACS. After overnight stimulation with IL‐2, NK cells (1 × 105) were placed into the upper chambers for migration test. DPP4 protein (Biolegend; Cat #764102) and the supernatants from NKTCL cells (YT and NK‐92) were incubated with DPP4 inhibitor (Linagliptin; Selleck; Cat #S3031) or DMSO (Sigma‐Aldrich; Cat #D4540) as control for 1 h, which were then incubated with culture medium without chemokines (PBS) or containing 100 ng mL−1 of chemokine mixture with CXCL2 (R&D Systems, USA; Cat #276‐GB‐010), CXCL9 (R&D Systems; Cat #392‐MG‐010), and CXCL10 (R&D Systems; Cat #266‐IP‐010) for a 6‐h pretreatment and subsequently added into lower chambers. Migrated NK cells were collected for cell counting after incubation at 37 °C and 5% CO2 for 3 h. Transwell assays were performed in seven independent replicates.
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10

Cytokine Measurement by ELISA

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Cytokine levels were measured by commercially available enzyme-linked immunosorbent assay (ELISA) kit according to manufacturer instructions: CXCL9, IL-6, TNF-α, and CCL-17 (R&D Systems, Minneapolis, MN).
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