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4 protocols using nup153

1

Immunocytochemistry and Western Blot Antibodies

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The following primary antibodies were used for immunocytochemistry and Western blot analysis: rabbit polyclonal antibodies against lamin B1, Tpr, importin α7 (Abcam, Cambridge, MA), pHIST3 (serine 10), MAP-2 (Merck Millipore, Darmstadt, Germany), actin, βIII-tubulin (Sigma-Aldrich, Milano, Italy), pERK, pCREB (Cell Signaling, Beverly, MA), lamin A/C (Santa Cruz Biotechnology, Dallas, TX), synaptophysin (SySy, Gottingen, Germany), and drebrin (Enzo Life Sciences, Farmingdale, NY); and mouse monoclonal antibodies against Nup153, lamin B2, CREB (Abcam), nuclear pore complex (mAb414; Covance, Princeton, NJ), Lap2β (BD Biosciences, East Rutherford, NJ), Tau (Tau-1; Merck Millipore), ERK (Cell Signaling), importin β (Sigma-Aldrich), and Alexa 488–conjugated Tuj1 (Covance). For Western blot analysis, horseradish peroxidase (HRP)–conjugated secondary antibodies (Bio-Rad, Hercules, CA) were used for detection. For immunofluorescence analyses, Alexa fluorophore–conjugated anti-mouse, anti-rabbit, and anti-rat antibodies from Invitrogen (Thermo Fisher Scientific, Waltham, MA) were used. Unless otherwise specified, general reagents and chemicals were from Sigma-Aldrich, and reagents for cell cultures were from Invitrogen.
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Immunofluorescence Staining of CV-1 Cells

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For immunofluorescence, CV-1 cells were seeded on glass cover slips and fixed with cold methanol (-20 °C) for 5 minutes. The cover slips were washed briefly in PBS and then incubated in 10% bovine serum albumin (BSA) (10% w/v BSA in PBS 7.4) for 5 minutes. The cells were decorated with primary antibodies against α-tubulin (Sigma-Aldrich, St. Louis, USA), vimentin (Sigma-Aldrich), β-actin (Sigma-Aldrich), Nup153 (Abcam, Cambridge, UK) at RT in a wet-chamber. After one hour of incubation the cover slips were washed in Tris-NaCl buffer (100 mM Tris-HCl 150 mM NaCl, pH 8.2) for 5 minutes. The purified FLASR protein was used to detect the primary antibody in a concentration of 100 μg/mL in Tris-NaCl buffer. After 1 h the cover slips were washed in Tris-NaCl buffer, mounted in Tris-NaCl buffer on microscope slides and sealed with picodent twinsil silicone (picodent, Wipperfürth, Germany). For conventional (confocal) light microscopy samples were embedded in Mowiol containing the anti-bleaching reagent DAPCO [26 ] and DAPI for DNA staining (final concentration: 2.5 μg/ml; Sigma Aldrich).
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Comprehensive DNA Damage Response Assay

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ATR, p-CHK1 (S345), RPA70, and p-histone H3 (Ser10) antibodies were obtained from Cell Signaling; ATRIP, NUP153, and RPA32 were obtained from Abcam; TPR, γH2AX (S139), and lamin A Abs were obtained from Sigma and Millipore; and Chk1 was obtained from Leica. EdU (click-IT), RPA70-, TopBP1-, and RAD17-small hairpin RNAs (shRNAs) were obtained from Invitrogen and Origene Technologies, respectively. ATR-specific inhibitor and ATR shRNA were from Dr. Oscar Capetillo (Centro Nacional de Oncologia [CNIO]) (Toledo et al., 2011 (link)); the GFP-ATR plasmid was from Dr. Randal Tibbetts (Tibbetts et al., 2000 (link)); RFP-Lamin was from Prof. Howard J. Worman (Columbia University) (Ostlund et al., 2006 (link)); and RFP-Nucleophosmin was a gift by Dr. Michelle Hill (University of Queensland). GFP-H2B and m-cherry-H2B were from IFOM. Colchicine, α-tubulin Ab, Leptomycin B, Hydroxy Urea, sorbitol, Aphidicholine, and R3306 CDK1-specific inhibitor were obtained from Sigma.
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Antibodies Used in MYC Regulation

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The following antibodies were used: MYC (monoclonal anti-pS62 [Abcam, ab78318] and polyclonal anti-pS62 [Zhang et al. 2012 (link)]), anti-pT58 (Abm, Y011034), anti-total (Santa Cruz Biotechnology, N262 and C33), PIN1 (Santa Cruz Biotechnology, sc-15340; Novas Biologicals, 2f2), TPR (Santa Cruz Biotechnology, sc121094 and sc67116), GCN5 (Santa Cruz Biotechnology, sc20698), CDK2 (Santa Cruz Biotechnology, sc-163), CDK4 (Santa Cruz Biotechnology, sc-160), ERK (CSG, 4695S) H3 (Upstate Biotechnology, 31560), H3ac (Millipore, 06-599), NUP153 (Abcam, ab24700), NUP98 (Santa Cruz Biotechnology, sc-74578), NUP214 (Abcam, ab70497), Lamin A/C (Santa Cruz Biotechnology, sc-7292, sc-2068, and sc-6215), V5 (Invitrogen, 1718556), and HA (Abm, G036).
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