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5 protocols using rhodamine conjugated α bungarotoxin

1

Neuromuscular Junction Imaging

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Fresh hemi-diaphragm muscle was dissected as described above and connective tissue was removed for optimum antibody penetration. Incubation with primary antibodies SMI-312R (Covance, Princeton, NJ) and SV2-s (DSHB, Iowa City, IA) followed by the FITC anti-mouse IgG secondary (Jackson ImmunoResearch Laboratories, West Grove, PA) labelled motor axons and axon terminals, respectively. Rhodamine-conjugated α-bungarotoxin (Life Technologies) labelled postsynaptic acetylcholine receptors. Diaphragms were then coverslipped with Vectashield mounting medium (Vector Laboratories, Burlingame, CA). Diaphragms were imaged on a FluoView FV1000 confocal microscope (Olympus, Center Valley, PA) and analyzed in a blinded manner for total numbers of intact, denervated and partial denervated NMJs (Wright et al., 2007 (link); Wright et al., 2014 (link); Wright et al., 2009 (link); Wright and Son, 2007 (link)). We restricted NMJ analysis to the ipsilateral hemi-diaphragm because no change in denervation or sprouting in contralateral hemi-diaphragm was detected after unilateral cervical contusion SCI in our previous study (Nicaise et al., 2012b ).
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2

Antibody Characterization for Muscular Dystrophy Analysis

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Anti-ganglioside GM1 antibody was purchased from Millipore (345757). Rabbit polyclonal antibody to Galgt1 peptide CQVRAVDLTKAFDAEE was made in our lab by immunizing rabbits with KLH-conjugated peptide, after which antibody was purified over peptide-conjugated resin as previously described [61 (link)]. Anti-mouse Pax7 antibody was a gift from Dr. Michael Rudnicki (Ottawa Health Research Institute). Anti-mouse integrin α7 conjugated to fluorescein isothiocyanate (FITC) was purchased from MBL International (K0046-4) and R & D Systems (FAB3518F). Anti-mouse CD11b conjugated to FITC and Rat anti-Ertr7 were gifts from Dr. Jill Rafael-Fortney (The Ohio State University). Rat anti-mouse Ly-6A/E conjugated to FITC (Sca1, 553335), rat anti-mouse CD45 conjugated to PE-Cy7 (552848), rat anti-mouse CD31 conjugated to APC (551262), and rat anti-mouse CD16/CD32 Fc block (553142) were purchased from BD Biosciences. All secondary antibodies conjugated to fluorophores were purchased from Jackson ImmunoResearch. Rhodamine-conjugated α-bungarotoxin was purchased from Life Technologies. Sections from normal human and Duchenne muscular dystrophy muscle biopsies from clinical specimens archived as part of the United Dystrophinopathy Project were obtained in accordance with approval from the Institutional Review Board.
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3

Neuromuscular Synapse Reinnervation Assessment

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Muscle re-innervation was also assessed by counting the number of re-innervated motor endplates. The number of presynaptic terminals immunoreactive to the synaptic vesicle protein, SV2, was assessed three and four weeks following nerve transection and repair. The re-innervated gastrocnemius muscles were harvested and cryoprotected in sucrose, as described above. Muscles were then sectioned on a cryostat in a horizontal plane at 20 µm thickness, placed on slides, and reacted with an antibody to SV2 (1:50; Developmental Studies Hybridoma Bank) for 72 hours at 4° C, followed by a goat anti-mouse immunoglobulin secondary antibody conjugated to Alexafluor 647 (1:200; Life Technologies D22914), and rhodamine-conjugated α-bungarotoxin (1:1000; Life Technologies B35451). In each muscle studied (20 cases), fluorescent images of 50 motor endplates marked by bungarotoxin binding were obtained and scored for immunoreactivity to SV2 within the boundaries of the endplate, indicating the presence of an overlying neuromuscular synapse. The percentage of re-innervated (SV2+) gastrocnemius motor endplates was compared between treatment groups (untreated and optically treated, each as a percentage of intact).
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Quantifying Acetylcholine Receptor Clustering

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150,000 C2C12 myoblasts were seeded on 35 mm tissue culture dishes in proliferation medium (DMEM with 4.5 g/l glucose, L-glutamine and sodium pyruvate; 10% Fetal bovine serum; penicillin/streptomycin). Upon cells reaching confluence, the medium was replaced with differentiation medium (DMEM low glucose, L-glutamine and sodium pyruvate; 2% horse serum; penicillin/streptomycin). After 2 to 3 days, myoblasts fused to form myotubes. NT-1654, diluted in differentiation medium, was subjected in different concentrations to the C2C12 myotubes for 16 hours. Myotubes were stained for AChRs by adding 500μl of (1 µg/ml) rhodamine conjugated α-bungarotoxin (Invitrogen) to the dish and incubation for 45-60min at 37°C. The dishes were washed 3 times with 1–2 ml MEM and fixed with 95% ice cold ethanol for 5min at –20°C. Ethanol was removed and evaporated for 3 minutes until the dish was dry. The dishes were mounted with Citifluor (Fig S2A). The area of AChR clusters per myotube was measured and normalized to area of the myotubes. For the calculation of the EC50, the mean value of AChR cluster area at 108 nM, 36 nM and 12 nM was set to 100% since the maximal clustering activity was achieved at these concentrations.
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5

Comprehensive Antibody Staining Protocol

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The following antibodies were used in this study: anti-FLAG (M2, Sigma Aldrich, St. Louis, MO), anti-HA (H6908, Sigma;3F10, Roche, Mannheim, Germany), anti-SOD1 (SOD100, Enzo Life Science, Farmingdale, NY; C17, Santa Cruz Biotechnology, Santa Cruz, CA), anti-chromogranin B (26102, QED Bioscience, San Diego, CA; PA1-10839, Thermo, Rockford, IL), B8H10 (33), C4F6 (37), anti-TGN38 (M290, Santa Cruz), anti-synaptophysin (D35E4, Cell signaling technology, Danvers, MA), anti- synaptotagmin V (46, Santa Cruz), anti-Akt1 (B1, Santa Cruz), anti-Mac2 (hybridoma from ATCC, Rockville, MD, USA), anti-glial fibrillary acidic protein (GFAP) (GA5, Cell signaling), anti-choline acetyltransferase (ChAT) (AB144P, Millipore, Billerica, MA), anti-neuronal nuclear antigen (NeuN) (MAB5294, Millipore), anti-actin (Millipore), anti-human protein gene product 9.5 (PGP9.5) (7863-0504, AbD Serotec, Raleigh, NC), anti-vesicular acetylcholine transport (VAChT) (Milipore), rhodamine conjugated α-Bungarotoxin (Invitrogen, Carlsbad, CA), anti-Bip (3177, Cell Signaling; ab21685, abcam, Cambridge, MA), anti-phospho-protein kinase-like endoplasmic reticulum kinase (PERK) (16F8, Cell Signaling), anti-C/EBP-homologous protein (CHOP) (F168, Santa Cruz), anti-caspase 12 (2202, Cell Signaling), SMI32 (Covance, Princeton, NJ), anti-SRY (E19, Santa Cruz).
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