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10 protocols using sterile disc

1

Antibacterial Activity of Leaf Extracts

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Antibacterial activity of different solvent fractions of leaves
extract was carried out using disk diffusion method described
earlier [33 (link), 34 ]. The test samples were diluted to different stock
concentrations in TS, so as to keep the volume of applied sample
constant. Bacterial strains were cultured in Luria bertani broth at
37°C overnight. Bacterial suspension of 1x105 cfu/mL (0.5
McFarland unit) were prepared and 0.1 mL of suspension was
spread uniformly on nutrient agar plates. A sterile disc (10 mm in
diameter, HiMedia Laboratories Pvt. Ltd., India) impregnated
with different concentrations of the test extracts, was placed
aseptically and gently pressed to ensure contact onto the surface
of the inoculated agar plate. The plates were incubated at room
temperature for 1 h to diffuse the test fractions into the medium.
Plates were then incubated at 37°C overnight (14-16 h). Post
incubation, zones of inhibition was measured as an indicator of
activity. Sterile disks impregnated with TS were included as
negative control. Each experiment was performed at least three
times.
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2

Joss Fly Ash Biodetection Assay

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A few hundred grams of joss fly ash were collected from a joss paper burning furnace located in a Chinese temple in a northern state of Malaysia. Sodium hydroxide, sulfuric acid, Tween-20, Tris-buffer, (3-aminopropyl)triethoxysilane (APTES), 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC), and N-hydroxysuccinimide (NHS) were procured from Sigma Aldrich (USA). Enzyme-linked immunosorbent assay (ELISA) plates and horseradish peroxidase (HRP)-conjugated streptavidin were purchased from Thermo Scientific (USA). An ELASA coating buffer (5×) was procured from Biolegend (Japan). Bovine serum albumin (BSA) and 3,3′,5,5′-tetramethylbenzidine (TMB) were procured from Promega (USA). Biotinylated ampicillin aptamer with an ssDNA sequence of 5′-CACGGCATGGTGGGCGTCGTG-3′ was synthesized from a local supplier (Apical Scientific, Malaysia). The Escherichia coli and Bacillus subtilis strains were obtained from the School of Bioprocess Engineering, University Malaysia Perlis. A sterile disc was purchased from HiMedia Laboratories Pvt. Ltd. (Mumbai, India).
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3

Antibacterial Efficacy of Chrysanthemum indicum Extracts

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The antibacterial efficacy was assayed by the standard Kirby–Bauer disc diffusion method39 (link) against Gram-positive and Gram-negative pathogenic bacteria. The bacterial suspension (108 colony-forming units/mL) was swabbed on the Mueller Hinton Agar plates using sterile cotton swabs. The sterile disc (Hi-Media Laboratories Pvt Ltd), which was 6 mm in diameter, was impregnated with the following four different components, including an aqueous extract of C. indicum, AgNO3, and synthesized AgNPs at the concentrations of 25 μg/disc. Streptomycin was used as a control. The discs were gently pressed and incubated at 37°C for 24 hours. The zone of inhibition in the diameter of each disc was measured in millimeters using a Hi-Media Laboratories Pvt Ltd. zone scale. The minimum inhibitory concentration (MIC) was determined according to the standard broth microdilution method.40 The experiments were performed in triplicate.
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4

In-vitro Antimicrobial Evaluation of BEO

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The BEO was evaluated for its in-vitro antimicrobial activity as per Sfeir et al. [31 (link)] against eight pathogens and spoilage organisms by Kirby-Bauer disc diffusion method on Mueller-Hinton agar (MHA) plate. Discs were prepared by incorporating 20 µL of BEO of different concentrations (2.5%, 5%, 7.5% and 10%) into each sterile disc (HiMedia, Mumbai, India) separately. Each test organism’s inoculum was prepared in sterile MHA and the turbidity of each suspension was adjusted equal to 0.5 MacFarland standard, which is equal to 1.5 × 108 colony forming units (CFU/mL) for bacteria. Each bacterial culture (20 µL) used in this study was spread on separate MHA plates and the discs containing the above four concentrations of BEO were placed on each MHA plate. The plates were incubated at 37 °C for 18–20 h and the zone of inhibition (ZOI) were measured (in cm) by measuring the diameters of clear zones around the discs. Streptomycin filter discs were used as a control in the study and the ZOI of the BEO was compared with that of the control drug against each bacterium. Each test was performed in triplicate, and the results are expressed in cm ± standard deviation (SD).
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5

Agar Disc Diffusion for Antimicrobial Assay

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The entire procedure of agar disc diffusion (Baeur et al., 1966) was done aseptically.
Stock solutions of 10,000 ppm were prepared for each chemical using sterile distilled water. For each chemical, seven concentrations consisting of 5000, 2500, 1000, 750, 500, 250 and 100 ppm were prepared employing serial dilution. A homogenous bacterial suspension was prepared from three days-old culture and sterile distilled water.
A lawn of inoculum was spread onto solidified MWA plates and allowed to dry for 30 minutes. Sterile disc (HiMedia Laboratories) of 6 mm diameter impregnated with 30 µl of chemical was placed at the centre of the plate with inoculum lawn and incubated. The experiment was conducted with three replications per treatment. After 72 hours, the zone of inhibition (excluding the diameter of the disc) was recorded and percent inhibition was calculated as follows:
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6

Antimicrobial Activity of Crude Extracts

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The crude extracts were dissolved in Dimethyl sulphoxide (DMSO) and extracts were loaded on the 6 mm dia. sterile disc (Himedia, Bombay) with the concentrations of 1.25, 2.5 and 5mg/disc. 8
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7

Antibacterial Activity Evaluation

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Antibacterial activity of IVP and IRP of stems and leaves of different solvent extract was determined using disc diffusion method [36] (link). The overnight inoculated bacterial cultures were spread over the freshly prepared Muller-Hinton agar plates. The 6 mm sterile discs (Himedia) was kept on at centre of plate and different concentration of both explant solvents (50, 100, 200 and 300 μg/ml) was poured on disc. The streptomycin disc (reference disc) also kept on the plate incubated at 37 °C for 24 h. After incubation the zone of inhibition was measured.
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8

Antimicrobial Evaluation of Extract

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Antimicrobial activity of active fraction was assessed by disk diffusion method against Staphylococcus epidermidis (MTCC 435), Staphylococcus aureus (MTCC 740), Bacillus cereus (MTCC 1272), Escherichia coli (MTCC 40), Klebsiella pneumoniae (MTCC 661), Micrococcus luteus (MTCC 7950) Aspergillus flavus (MTCC 2590), Fusarium moniliforme (MTCC 6576), Bipolaris maydis and Alternaria alternata (MTCC 1362). The sterile discs (6 mm, Himedia) were impregnated with 30 μL of crude extract. The pathogens were inoculated in Mueller-Hinton broth (24 h for bacteria, Himedia) and Sabouraud Dextrose both (72 h for fungi, Himedia). The well-grown bacterial and fungal cultures were plated on Mueller-Hinton agar and Potato Dextrose agar respectively (Himedia). sterile discs loaded with extract were placed on the plate. Chloramphenicol discs (Himedia) were used as positive control for antibacterial assay, while nystatin discs (Himedia) were used for the antifungal assay. Discs impregnated with dimethyl sulfoxide (DMSO, Himedia) were used as the solvent control. The plates were incubated at 37 °C and room temperature (for test bacteria and fungi respectively) and the zone of inhibition was measured.
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9

Antibiotic Susceptibility Profiling of Bacterial Strains

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Mueller−Hinton agar (Himedia Laboratories Pvt, Ltd., Mumbai, India) was the agar selected for the antibiograms. The initial inoculation level reached approximately 150 × 106 CFU/mL (colony-forming units) (0.5 McFarland scale) for all strains tested.
The method applied was the agar diffusion method. Briefly, 1 mL of inoculum from each strain was plated on the surface of Mueller−Hinton agar, and the antibiotic discs were placed as well.
Levofloxacin (5.03 BCg/disc) for E. coli, penicillin-G (10 units/disc) for S. aureus strains, and vancomycin (30 μg/disc) for Streptococcus strains were employed as reference antibiotics; 10 μL of each extract were placed on sterile discs (Himedia Laboratories Pvt, Ltd., Mumbai, India), and petri dishes were incubated overnight at 37 °C. The inhibition diameter around the disc was measured with a Traceable Carbon Fiber Digital Caliper (Fisher Scientific Ltd., Nepean, ON, Canada). All measurements were performed in triplicate (n = 3).
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10

Antimicrobial Efficacy of Plant Extracts

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Sterile discs (Hi Media) of 6mm were used to load the plant extract. Various concentration of extract such as 30, 40, 50, 60 mg were dissolved in Dimethyl Sulfoxide (DMSO) and loaded in the discs. The standard antibiotic generation was used as a control due to its broad spectrum of activity against various organisms.
The impregnated discs were incubated at 37ºC for an hour. The dried discs were placed over the surface of swabbed medium with equal distance to avoid the overlapping of the zones of inhibition. The discs were gently pressed on the surface of the medium and they were placed at least 25mm away from the edge.
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