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17 protocols using mkn45

1

Establishment of 5-FU-tolerant gastric cancer cell lines

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The human gastric cancer cell lines MKN45 and MKN74 were obtained from the RIKEN Cell Bank. Cells were cultured at 37 °C in RPMI 1640 medium supplemented with 10% fetal bovine serum and 5% CO2, 80% humidity. Cells were subsequently cultured in the presence of continuous (3 to 5 day) 5-FU exposure followed by increasing concentrations of 5-FU for approximately one year. The timing of the passages and drug concentrations were adjusted based on the growth rate. Here, MKN45 and MKN74 cells were established as the 5-FU-tolerant lines MKN45/5FU and MKN74/5FU, respectively11 (link). Except for the colony profiling and western blot described below, we used MKN45/5FU cells for all subsequent studies. Growth suppression and colony formation assays were carried out to confirm the cell line characteristics as previously described8 (link). In addition to 5-FU, CIS, DTX, sorafenib, and gefitinib were used in the assays to eliminate cross-resistance.
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2

HER2-expressing Gastric Cancer Cells

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HER2-expressing human gastric cancer cell line NCI-N87 was purchased from American Type Culture Collection (ATCC) (Manassas, VA, USA), as was HER2-negative BALB/3T3 cells as negative controls. HER2-negative human gastric cancer cell line, MKN45 cells were purchased from RIKEN Cell Bank (Tsukuba, Japan). Cells were cultured with RPMI 1640 (Life Technologies) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Life Technologies) in tissue culture flasks in a humidified incubator at 37 °C in an atmosphere of 95% air and 5% CO2.
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3

Gastric Cancer Cell Culture Protocol

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Human GC cell lines HGC27 (RCB0500) and MKN45 (RCB1001) were purchased from the Riken Cell Bank (Tokyo, Japan) and cultured in Dulbecco’s modified Eagle’s medium (DMEM) with 10% FBS (Sigma-Aldrich, St. Louis, MO, USA).
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4

Gastric Cell Lines Cultivation Protocol

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Human gastric cell lines included AGS, MKN28, MKN45, and GES1 cells. The MKN28 and MKN45 were purchased from Riken Cell Bank (Tsukuba, Japan). AGS and cells were purchased from American Tissue Culture Collection (ATCC, Manassas, VA), whereas GES1 Human gastric epithelial cell line was a gift from Dr. Kidane-Mulat (University of Texas-Austin). Cells were cultured Following the recommended culture medium, RPMI 1640 medium (Thermofisher Scientific, USA) or F12 Ham medium (Thermofisher Scientific, USA), with 10 % fetal bovine serum (Thermofisher Scientific, USA) and 1 % penicillin/streptomycin (Thermofisher Scientific, USA). In addition, the recombinant human fibroblast growth factor 19 (FGF19) was purchased from Thermofisher Scientific (Thermofisher Scientific, USA).
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5

Establishment of Human Gastric Carcinoma Cell Lines

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Six human gastric carcinoma cell lines, H-111-TC, HGC-27, Kato-III, MKN-1, MKN-45 and NU-GC-4 were purchased from Riken Cell Bank (Tsukuba, Japan) and used in the present study. According to the description by the Riken Cell Bank and literature (22 (link)–27 (link)), these cell lines originated from 1 unknown origin (H-111-TC) and 5 metastatic carcinoma, as well as 2 tubular (well differentiated or adenosquamous) carcinoma (H-111-TC and MKN-1) and 4 poorly differentiated carcinoma including signet ring cell type. HGC-27 and MKN-1 cell lines were maintained in Dulbeccos modified Eagles medium (DMEM; Gibco-BRL, Rockville, MD, USA), whereas NU-GC-4, Kato-III, MKN-45 and H-111-TC cell lines were maintained in RPMI-1640 (Gibco-BRL), supplemented with 10% fetal calf serum (FCS), penicillin, and streptomycin, at 37°C in a humidified atmosphere of 5% CO2. When they reached 80–90% confluence, the cells were washed with phosphate-buffered saline (PBS) and homogenized immediately in Isogen reagent (Nippon Gene, Osaka, Japan). Total RNA was extracted according to the manufacturers instructions.
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6

Gastric Adenocarcinoma Cell Line Characterization

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The gastric adenocarcinoma cell lines AGS, SNU1, MKN28, MKN45, and STKM2 were used in the study. The immortalized nonneoplastic gastric (GES1) and esophageal (EPC2) cell lines were included as normal controls. AGS and SNU1 cells were purchased from American Type Culture Collection (ATCC, Manassas, VA). MKN28 and MKN45 cells were obtained from the Riken Cell Bank (Tsukuba, Japan). EPC2 cells were kindly provided by Dr. Anil Rustgi (University of Pennsylvania, Philadelphia, PA). GES1 cells were kindly provided by Dr. Dawit Kidane-Mulat (University of Texas at Austin, Austin, TX). AGS cells were cultured in Ham's F12 media (GIBCO, Carlsbad, CA) supplemented with 5% fetal bovine serum (FBS, Invitrogen Life Technologies, Carlsbad, CA) and 1% penicillin/streptomycin (P/S) (GIBCO). MKN28, MKN45, and GES1 cells were cultured in Roswell Park memorial institute (RPMI) medium (GIBCO) supplemented with 10% FBS and 1% P/S. EPC2 cells were cultured in Keratinocyte serum-free medium supplemented with recombinant epidermal growth factor and bovine pituitary extract (GIBCO). All cell lines were ascertained to conform to the original in vitro morphological characteristics and were authenticated using short tandem repeat (STR) profiling (Genetica DNA Laboratories, Burlington, NC). All cell lines reported here have been tested and had shown to be free of mycoplasma (R&D Systems, Minneapolis, MN).
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7

Gastric Cancer Cell Line Characterization

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The GC cell line 58As9 was kindly provided by K. Yanagihara (National Cancer Center Hospital, Kashiwa, Japan). 58As9 was established from parental HSC-58 (scirrhous gastric carcinoma-derived cell line), and was reported to be associated with high rates of fatal cancerous peritonitis and ascites in a mouse orthotopic implantation model38 (link). Another GC cell line, MKN45 (poorly differentiated adenocarcinoma), was purchased from the RIKEN Cell Bank (Tsukuba, Japan). The cell lines were grown in complete culture medium [RPMI-1640 medium (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% fetal bovine serum (FBS; Biowest, Nuaillé, France) and 100 µg/ml kanamycin (Meiji, Tokyo, Japan)] at 37 °C in a humidified atmosphere. For the experiments, cells were cultured under normoxic (5% CO2 in air) and hypoxic conditions (1% O2, 5% CO2 in N2). Chloroquine diphosphate (CQ), N-acetyl-l-cysteine (NAC) and 5-aza-2-deoxycytidine (5-aza-dC) were purchased from Sigma-Aldrich and used at final concentrations of 20 mM, 10 and 5 µM, respectively.
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8

Culturing GC Cell Lines

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The GC cell lines Kato-III, NUGC4, MKN45, and MKN74 were purchased from RIKEN Cell Bank (Tsukuba, Japan) and cultured in either Roswell Park Memorial Institute 1640 medium (Sigma, St. Louis, MO) or Dulbecco’s Modified Eagle Medium (Nacalai, Japan) supplemented with 10% fetal bovine serum (Trace Scientific, Melbourne, Australia). All cells were cultured in 5% carbon dioxide at 37°C in a humidified chamber.
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9

Gastric Cancer Cell Line Culturing and De-methylation

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Human gastric cancer cell lines AGS, SNU1, SNU16 and SNU601 purchased from ATCC (American Type Culture Collection). MKN28 and MKN45 cells were obtained from the Riken Cell Bank (Tsukuba, Japan). AGS, SNU1, SNU16 and MKN45 were cultured in F-12 medium (GIBCO, Carlsbad, California, USA) supplemented with 10% fetal bovine serum (FBS, Invitrogen, Life technology) and 1% penicillin/streptomycin (GIBCO, Carlsbad, California, USA). SNU601 and MKN28 were cultured in 1640 medium (GIBCO, Carlsbad, California, USA), supplemented with 10% fetal bovine serum (FBS, Invitrogen, Life technology) and 1% penicillin/streptomycin (GIBCO, Carlsbad, California, USA) at 37°C in an atmosphere containing 5% CO2. All cell lines were ascertained to conform to the original in vitro morphological characteristics and were authenticated by Genetica DNA Laboratories using short tandem repeat (STR) profiling (Genetica DNA Laboratories, Burlington, NC). Mycoplasma was tested and was negative in all cells using the q-PCR method (Thermo Fisher Scientific, USA). De-methylation was induced with 5-Aza-2′ Deoxycytidine (5-Aza) (Selleckchem, Houston, TX, USA) treatment at a concentration of 5μM. Cells were incubated for 72 hours with 5-Aza with replacement of the culture media with fresh media containing 5-Aza every 24 hours.
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10

Gastric Cancer Cell Line Cultivation

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MKN7, MKN45, MKN74, HGC27, and NUGC4 human GC cell lines were purchased from the Riken Cell Bank (Tsukuba, Japan). Cells were cultured in RPMI-1640 (Nacalai Tesque, Kyoto, Japan) containing 100 μg/mL of streptomycin, 100 U/mL penicillin, and 10% FBS at 37 °C in a 5% CO2 incubator. Rabbit polyclonal anti-ANO5 antibody was obtained from Funakoshi (GTX81161) for immunohistochemical (IHC) analysis and western blotting. Mouse monoclonal anti-β-actin antibody was provided by Sigma-Aldrich (St. Louis, MO, United States) and HRP-conjugated anti-rabbit and mouse secondary antibodies by Cell Signaling Technology (Beverly, MA, United States).
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