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11 protocols using alexa fluor 546 goat anti human igg

1

Seroprevalence of P. ovale Infection

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Serum samples from 29 cases of P. ovale-infected and 20 healthy individuals were screened by well-type amine arrays. The screening was performed as previously described [41 , 42 (link)]. Briefly, modified glass slides (75 × 25 mm,) were prepared for the protein arrays (CapitalBio, Beijing, China) and warmed to room temperature before use. Teflon tapes with holes were pasted on array glass slides to ensure integrity of the array. One microliter of rPocMSP119-GST, rPowMSP119-GST and GST solution in PBS (100 ng/µl) was spotted into each well of the arrays and incubated for 2 h at 37 °C. Array slides were washed three times with PBST for 10 min and were blocked with 5% of bovine serum albumin in PBST at 37 °C for 2 h. The arrays were washed again and probed with 1 µl of serum samples at 1:200 dilution. Finally, 1 µl of Alexa Fluor 546 goat anti-human IgG (10 ng/µl; Invitrogen) in PBST was added to the arrays for antibody detection. The intensity of the serological responses was measured by a fluorescent microarray scanner (CapitalBio). The positive cut-off value was calculated as the mean fluorescence intensity (MFI) of negative controls plus 2 SD. A Mann–Whitney U-test was performed to compare differences in MFI between groups.
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2

Protein Microarray for PvRBP1a Antigenicity

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Protein microarray was performed for evaluating total antigenicity using recombinant PvRBP1a-N and PvRBP1a-C. Three aminopropyl-coated slides were prepared as described previously [42 (link)]. The slides printed with optimised concentration of recombinant protein (PvRBP1a-N, 100 ng/μl and PvRBP1a-C, 50 ng/μl) to each spot were incubated for 2 hours at 37°C, and these slides were blocked with blocking buffer (5% BSA in PBS-T, 0.1% Tween 20) for 1 hour at 37°C. Healthy and vivax malaria patient sera were diluted in PBS-T to 1:25 ratio and treated on the chip for 1 hour at 37°C. The arrays were visualized with 10 ng/μl of Alexa Fluor 546 goat anti-human IgG (Invitrogen, Carlsbad, CA, USA) in PBS-T for 1 hour at 37°C and scanned using InnoScan 300 (INNOPSYS, France). The positive cut-off values calculated by negative control mean fluorescence intensity (MFI) plus two standard deviations.
Additionally, antigens were heat-treated at 80°C for 5 minutes to characterise the epitope. The linearized antigen also used for the microarray as described above.
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3

Humoral Immune Response Analysis of Vivax Malaria

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In the present study, we prepared amine-coated slides as described previously [11 (link), 12 (link)]. Briefly, 112 cases of vivax malaria and 80 unexposed individual serum samples were used for humoral immune response analysis. Purified Pv50 protein was spotted into duplicate wells of the arrays at 100 ng/μl in PBS and incubated for 1 h at 37 °C. After blocking with 1.0 μl of blocking buffer (5% bovine serum albumin in PBS with 0.1% Tween 20, PBS/T) for 1 h at 37 °C, the chips were probed with initial pre-absorbed sera from malaria patient or healthy individual sera (1:10 dilution) in wheat germ lysate (1:100 dilution) to block the anti-wheat germ antibodies. The native Pv50 protein was detected by Alexa Fluor 546 goat anti-human IgG (10 ng/μl; Invitrogen) in PBS/T, and scanned in a fluorescence scanner (ScanArray Express; PerkinElmer, Waltham, MA, USA) [11 (link)]. The cut-off value was equal to the mean plus two standard deviations (SD) of the mean intensity of 80 negative samples.
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4

Multiplex Serological Profiling of Vivax Malaria

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Amine coated slides and protein arrays were prepared as described in previous studies [14 (link)–16 (link)]. Briefly, serum samples from 96 people with P. vivax malaria and 96 unexposed individuals were used for humoral immune response analysis. Purified rPv32 was spotted into duplicate wells for arrays at 25 ng/μl in PBS and incubated for 1 h at 37 °C. After blocking with 1.0 μl of blocking buffer (5% BSA in PBS with 0.1% Tween 20, PBS/T) for 1 h at 37 °C, the chips were probed with human sera from malaria patients or healthy individuals (1:50 dilution) that were first pre-absorbed against wheat germ lysate (1:100 dilution) to block anti-wheat germ antibodies. Samples were detected by Alexa Fluor 546 goat anti-human IgG (10 ng/μl, Invitrogen Corp.) in PBS/T, quantified as described previously and scanned by a fluorescence scanner (ScanArray Express, PerkinElmer, Boston, MA, USA) [14 (link)]. The cut-off value is equal to the mean ± three standard deviations (SD) of the mean fluorescence intensity (MFI) of the 96 negative samples.
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5

Microarray-based Serodiagnostic Approach

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Protein probing onto a microarray-specific slide and serum screening constitute the main components of this innovative technology. A well-type amine array as described by Chen et al. [21 (link)] will help identify serological biomarkers of human parasites as the project progresses. First, crude WGCF recombinant proteins, as well as positive and negative controls will be spotted as probes in duplicate on a microarray-specific slide and incubated. Then, serum samples from parasite-specific exposed versus unexposed individuals will be used to screen the probes. Bound antibodies will be visualized using Alexa Fluor 546 goat anti-human IgG (Invitrogen), scanned in a fluorescent microarray scanner (CapitalBio), and fixed circle approach will be used to quantify the arrays.
Furthermore, screening of the highly immuno-reactive antigens/epitopes will be performed to profile their immune responses using also sera from infected individuals and healthy subjects.
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6

Humoral Immune Response Protein Array Protocol

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For humoral immune response analysis, the protein array analysis was done as follows. Tri-amine coated slides were prepared by trimethoxysilane (Sigma-Aldrich, St Louis, Missouri, USA) on the microscope slide (Marienfeld-Superior, Lauda, Germany). The crude recombinant protein fragment (1 μl) of PvRBP was reacted to the amine-coated slide surface. After washing and blocking with PBS-T containing 5% bovine serum albumin (BSA), the array was probed with serial dilution (1:100 to 1:10) of malaria patient or healthy individual sera and with a 1:100 dilution of wheat germ lysate in PBS. Array conditions were optimized using 1:10 dilution of mixed sera from patients and healthy individuals. Alexa Fluor 546 goat anti-human IgG (Invitrogen) in PBS-T containing 1% BSA was applied into each spots for detection of the antibody reaction. The fluorescent signals were detected using a ScanArray Express fluorescence scanner (PerkinElmer, Boston, Massachusetts, USA). The cut-off value was defined as 3 standard deviations (SDs) above the mean fluorescence intensity (MFI) of the healthy individual samples. Recombinant P. vivax merozoite surface protein 1-19 (PvMSP1-19) was used as a positive control, and its MFIs were used for compensation in each slide.
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7

Protein Microarray for Vivax IgG Reactivity

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Protein microarray was performed to evaluate total IgG reactivity. 3 aminopropyl-coated slides were prepared as described previously [31 (link)]. The slides were printed to each spot with recombinant protein (RII, 200 ng/μl and RIII-V, 12.5 ng/μl) as a saturated concentration and incubated for 2 hours at 37°C. The recombinant protein coated slide was blocked with blocking buffer (5% BSA in PBS-T) for 1 hour at 37°C. Vivax patient and healthy individual sera were diluted in PBS-T to 1:25 and probed on the chip for 1 hour at 37°C. The arrays were visualized with 10 ng/μl of Alexa Fluor 546 goat anti-human IgG (Invitrogen, Carlsbad, CA, USA) in PBS-T for 1 h at 37°C and scanned with ScanArray Gx laser confocal scanner (PerkinElmer, Norwalk, CT, USA). The positive cut-off values calculated by negative control mean fluorescence intensity (MFI) plus two standard deviations.
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8

Peptide Epitope Mapping for PvMSP8

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An array of 22 peptides, 18-mer each (Additional file 1: Table S1) overlapping by nine amino acids with >90% purity and spanning the conserved C terminus of PvMSP8 Sal-1 sequences was custom synthesized, purified, and used for epitope mapping (Peptron Co., Ltd., Daejeon, Korea). In the process of coating step, 1 μL of peptides (10–40 μg/mL) in 200 mM 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC, Thermo Fisher Scientific Inc., Rockford, IL, USA) and 50 mM N-hydroxysuccinimide (NHS, Thermo Fisher Scientific Inc.) with coupling buffer were coated on amine-coated slide, respectively. After blocking, rPvMSP8-immunized mouse sera, pre-immunized mouse sera at 1:200 dilution, pooled sera from 10 high IgG titers of vivax-infected patients at 1:50 dilution, or 10 vivax-unexposed human sera at 1:50 dilution was added, respectively. Alexa Fluor 546 goat anti-mouse IgG (50 μg/mL, Invitrogen) or Alexa Fluor 546 goat anti-human IgG (10 μg/mL, Invitrogen) antibodies were used for detection of binding activity.
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9

Malaria Protein Array Optimization

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Amine-coated slides were prepared as described previously [15 (link)]. To develop protein arrays, sera samples from 56 cases of vivax malaria and 40 unexposed individuals were used for humoral immune response analyses using well-type amine arrays. A series of double dilutions was developed to optimize the coating concentration (0.1–200 μg/ml) of PvETRAMP11.2, and PvEXP1. The purified recombinant PvETRAMP11.2 and PvEXP1 proteins were spotted onto the duplicate wells of the arrays in PBS at 50 and 100 μg/ml, respectively, and incubated for 1 h at 37°C. Each well was blocked with 1.0 μl of blocking buffer (5% BSA in PBS with 0.1% Tween 20, PBS-T) and incubated for 1 h at 37°C. The chips were pre-absorbed against wheat germ lysate (1:100 dilution) to block anti-wheat germ antibodies and then probed with human malaria patients or healthy individuals (1:200 dilution). Alexa Fluor 546 goat anti-human IgG (10 μg/ml, Invitrogen) in PBS-T was used to detect antibodies, which was quantified as described previously, and the antibodies were scanned in a fluorescence scanner (ScanArray Express; PerkinElmer, Boston, MA, USA) [15 (link)]. The cutoff value was equal to the mean fluorescence intensity (MFI) plus two standard deviations (SDs) of the negative samples.
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10

Protein Microarray Assay for Antibody Detection

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Three aminopropyl-coated slides were prepared as described previously48 (link). Briefly, the slides were spotted and then each recombinant protein was applied to the spot at concentrations of 50 ng/μl for PvRBP1a-34 and 100 ng/μl for PvRBP1b-32. The slides were incubated for 2 h at 37 °C. After blocking, each spot was probed with 1 μl of patient or healthy serum (1:25 dilution in PBS-T) followed by incubation for 1 h at 37 °C. The arrays were visualized with 10 ng/μl of Alexa Fluor 546 goat anti-human IgG (Invitrogen, Carlsbad, CA, USA) in PBS-T for 1 h at 37 °C and scanned with a ScanArray Gx laser confocal scanner (PerkinElmer, Norwalk, CT, USA). The positive cut-off values of the negative control plus two standard deviations were used.
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