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5 protocols using mini transfer packs

1

Western Blot Analysis of Protein Samples

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Cells were lysed with RIPA Buffer (Cell Signalling Technologies) containing PhosSTOP phosphatase inhibitors and Complete mini EDTA-free protease inhibitor cocktail (both Roche). 20 μg of protein was resolved on pre-cast 4%–15% Mini-PROTEAN TGX Gels (Bio-Rad) and then transferred to a PVDF membrane using the Trans-Blot Turbo Instrument and Mini Transfer Packs (both Bio-Rad). Membranes were blocked in 5% skim-milk in Tris-buffered saline with 0.1% Tween 20 (TBS-T) and primary antibodies (Supplementary Table S7) were diluted in blocking buffer and incubated overnight. Membranes were subsequently washed 3 times for 10 min in TBST before incubation with species specific secondary antibody (Peroxidase AffiniPure, Jackson Immuno Research) diluted in TBST, for 2 h at room temperature. A further 3 × 10 min washes were then performed. Clarity ECL Western Blotting Substrate (Bio-Rad) was used to expose antibody reactivity and was applied according to the manufacturer’s guidelines. Imaging was performed using a ChemiDoc Touch instrument (Bio-Rad).
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2

Western Blot Analysis of Cardiac Protein Markers

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Left ventricular tissue was obtained 24 h or 5 d after multiple trauma or sham procedure and homogenized and lysed using RIPA Lysis Buffer (EMD Millipore, Darmstadt, Germany) containing complete Mini-protease inhibitor and PhosSTOP protease inhibitor cocktail (Roche). Protein concentrations were determined in homogenates using the Pierce® BCA Protein Assay Kit (Thermo Fischer Scientific, Waltham, MA, USA). Samples were loaded under reducing conditions onto a Mini-Protean®TGX™ Precast Gel (Bio-Rad Laboratories, Munich, Germany). After electrophoresis, the proteins were transferred by a Trans-Blot Turbo Transfer System using Mini Transfer Packs (Bio-Rad). The blots were blocked with 5% milk (C5aR1) or 5% bovine serum albumin (connexin 43 (Cx43)) in tris-buffered saline for 1 h at room temperature (RT) and incubated with antibodies (see below) overnight at 4°C. For analysis of the rat heart homogenates, rabbit anti-C5aR1 (Proteintech, Manchester, UK) and for Cx43 rabbit anti-connexin (Cell Signaling Technology, Danvers, MA) were used. HRP-conjugated anti-rabbit immunoglobulin G (IgG) (Cell Signaling) was used as a secondary antibody. Chemiluminescent HRP Hy Glo™ (Denville Scientific Inc, South Plainfield, NJ) was used. The blots were analyzed by ChemiDoc (BioRad Laboratories GmbH, Munich, Germany) and Image Lab Software (Version 5.2, BioRad).
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3

Western Blot Analysis of Cardiac Proteins

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Left ventricular tissue was obtained 72 h after multiple trauma or sham procedure and homogenized and lysed by using 1x RIPA Lysis Buffer (EMD Millipore) containing complete Mini-protease inhibitor and PhosSTOP protease inhibitor cocktail (Roche). Protein concentrations were determined in homogenates using Pierce® BCA Protein Assay Kit (Thermo Scientific). The samples were loaded under reducing conditions onto a 4–20% Mini-Protean®TGX™ Precast Gels (Bio-Rad Laboratories). After electrophoresis proteins were transferred by a Trans-Blot Turbo Transfer System using Mini Transfer Packs (both from Bio-Rad). The blots were blocked with 5% milk in tris-buffered saline (TBS) for 1 hour at room temperature (RT) and then incubated with antibodies (see below) overnight at 4 °C. For analysis of the pig heart homogenates rabbit anti-C5aR1 (Proteintech Group, Rosemont, IL, USA) and rabbit anti-Cx43 (Cell Signalling, Danvers, MA, USA) were used. After washing, HRP-anti-rabbit (Cell Signaling Technology, Danvers, MA, USA) was used as secondary antibody (1:15,000) at RT for 1 h followed by an additional washing step. Chemiluminescent HRP Hy Glo™ (Denville Scientific Inc, South Plainfield, NJ) was used for developing. The blots were analyzed by the ChemiDoc (BioRad Laboratories GmbH, Munich, Germany) and the Image Lab Software (Version 5.2, BioRad).
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4

Overexpression Enzyme Detection in Synechocystis

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In order to detect and quantify the overexpressed enzymes, crude protein extracts were prepared from frozen Synechocystis cells as described previously (Ivleva et al., 2007 (link)), and total protein concentrations were measured using the DC protein assay (BIO-RAD). For the detection by Western Blot, 20 ​μg of total protein were mixed with 4x Laemmli Sample Buffer (BIO-RAD) and incubated at 100 ​°C for 5 ​min. For the detection of the bisabolene synthase, 40 ​μg of total protein were used instead. The samples were then separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) using 4–15%, 12-well polyacrylamide precast gradient gels (BIO-RAD). The proteins were blotted to PVDF membranes using mini transfer packs (BIO-RAD) and identified using anti-strep-tag (Abcam, ab76949) and anti-FLAG-tag (Sigma-Aldrich, F3165) primary antibodies and HRP-conjugated secondary antibodies: rabbit anti-mouse IgG for FLAG-tag detection (Agrisera, #AS10 1114); and goat anti-rabbit IgG for Strep-tag II detection (BIO-RAD, #170–5046). Bands were detected using the Clarity ECL substrate (BIO-RAD).
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5

CLP-Induced Changes in Mouse Cardiac Proteins

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Mouse hearts were obtained 8, 12, 16, 24 and 48 hour after CLP and homogenized and lysed by using 1x RIPA Lysis Buffer (EMD Millipore) containing complete Mini-protease inhibitor and PhosSTOP protease inhibitor cocktail (Roche). Protein concentrations were determined in homogenates using Pierce® BCA Protein Assay Kit (Thermo Scientific). After centrifugation, pellets were resuspended in Laemmli Sample Buffer (Bio-Rad Laboratories) and boiled. After a last centrifugation step the samples were loaded under reducing conditions onto a 7.5% (NCX-1 and SERCA2) Mini-Protean®TGX™ Precast Gels (Bio-Rad Laboratories). After electrophoresis proteins were transferred by a Trans-Blot Turbo Transfer System using Mini Transfer Packs (both from Bio-Rad). The blots were blocked with 5% milk in TBS for 1 hour at RT and then incubated with antibodies (see below) overnight at 4°C. For analysis of the mouse heart homogenates, anti-SERCA2 ATPase (Abcam) and mouse anti-Na+-Ca2+-Exchanger (NaCX-1, EMD Millipore) were used. After washing, HRP-conjugated anti-mouse or anti-rabbit antibody (GE Healthcare, Buckinghamshire, UK) was used as secondary antibody (1:10,000) at RT for 1 hr followed by an additional washing step. Chemiluminescent HRP Hy Glo™ (Denville Scientific Inc, South Plainfield, NJ) was used for developing.
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