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146 protocols using tgf β1

1

MDCK Cell Culture and Treatment

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MDCK cells were cultured on six well culture plates for 48 hours in complete medium that contained 10% FBS, using previously described methods [17 (link)]. The cells were kept in serum free medium for 24 hours and then placed into medium supplemented with 1% FBS. The cells were treated with (1) only FBS medium, (2) AAT (10 mg/mL), (3) TGF-β1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA; 2 ng/mL), or (4) TGF-β1 (2 ng/mL) + AAT (10 mg/mL) for an additional 48 hours.
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Western Blot Analysis of Kidney Proteins

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Total kidney tissue protein was obtained with RIPA buffer as previously described. Protein concentrations were determined with a Bio-Rad protein assay kit (Hercules, CA, USA). For the western blot analysis, aliquots of the lysate containing 30–50 μg protein were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then electrotransferred onto a nitrocellulose membrane (Schleicher and Schuell, Keene, NH, USA). The membranes were subjected to immunoblot analysis and the proteins were visualized by an enhanced chemiluminescence (ECL) method (GE Healthcare, Buckinghamshire, UK). The cell lysates were separated by 12% SDS-PAGE, transferred onto a polyvinylidene fluoride membrane (GE Healthcare, Buckinghamshire, UK), blocked with 5% skimmed milk and hybridized with primary antibodies (diluted 1:1000). The antibodies against NF-κB-p65, IκB-α, TGF-β1, Fas and FasL were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). The blots were then incubated with the horseradish peroxidase—conjugated secondary antibody (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA) for 1 h at room temperature. The blots were washed three times with PBS-T and then developed by enhanced chemiluminescence (Amersham Life Science, Arlington Heights, IL, USA) [12 (link)].
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3

Exploring Renal Distal Tubule Epithelium Signaling

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A canine renal distal tubular epithelium cell line (MDCK) was purchased from the American Type Culture Collection (Rockville, USA). RSG, GW9662, and PHA665752 were obtained from Sigma-Aldrich (St. Louis, MO, USA). The following primary antibodies were used: p-Met, Smad7, TGF-β1, and PPAR-γ (Santa Cruz, USA); HGF (Abcam, USA); p-PPAR-γ (Ser112) (Bioss, China); c-Met (Proteintech, China); Smad2, Smad3, p-Smad2 3, and Lamin B (Wanleibio, China); and GAPDH (Zhongshan Golden Bridge Bio Co., Ltd., China). The secondary antibodies, including HRP-conjugated AffiniPure goat anti-rabbit IgG and HRP-conjugated AffiniPure goat anti-mouse IgG, were purchased from Zhongshan Golden Bridge Bio Co., Ltd. (Beijing, China). A Nuclear and Cytoplasmic Protein Extraction Kit was acquired from Beyotime Institute of Biotechnology (Shanghai, China).
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Immunofluorescent Staining of MCF-7 Cells

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MCF-7 cells were washed twice with PBS. Following fixation with 4% paraformaldehyde for 20 min at room temperature, cells were permeabilized with 0.2% Triton X-100 for 30 min at room temperature. Immunofluorescent staining was performed as described previously (24 (link)). DNA was stained using DAPI (Sigma-Aldrich; Merck KGaA). The ZBTB7A (cat. no. 175918; Abcam) and TGF-β1 (cat. no. 130348; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) antibodies were used at a dilution of 1:300 and incubated for 2 h at room temperature. Following this, they were washed three times with PBS, and then incubated for 1 h at room temperature with fluorescein isothiocyanate-conjugated secondary antibodies (cat. no. BA1101; dilution, 1:100; Boster Biological Technology Co., Ltd., Wuhan, China). Cells were examined using a confocal laser scanning microscope and images were produced using the QImaging system (QCAPTURE PRO 7; Surrey, BC, Canada) using a 10X oil-immersion objective (magnification, ×100).
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5

Notch and TGF-β Signaling Pathway Analysis

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Penicillin, streptomycin, DMEM, and FBS and the fluorescent-700 or -800 secondary antibodies were obtained from Invitrogen (Invitrogen Life Technologies; Carlsbad, CA). The γ-secretase Notch inhibitor, DAPT, was from Calbiochem (San Diego, CA) while human TGF-β1 was obtained from R&D (Minneapolis, MN). Antibodies against Notch 1-ICD, Wnt1, and SMA-α (rabbit) antibody were from Abcam (Cambridge, MA), while antibodies against smooth muscle myosin heavy chain (SMMHC), SMA-α-FITC, and β-actin were from Sigma-Aldrich (Louis, MO). The FSP1 antibody was from DAKO (Carpentaria, MA). Antibodies against PCNA (rabbit), Jagged1, Hes1, TGF-β1 and β-actin antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA). The anti-GFP monoclonal antibodies and polyclonal antibodies were obtained from Invitrogen (Carlsbad, CA) and Abcam (Cambridge, MA), respectively. Antibody against vimentin was from Genescript USA Inc (Piscataway, NJ). The full-length, Jagged-1 recombinant adenovirus was kindly provided by Dr. M.J. Post (Maastricht University, Netherlands). The FSP-1 overexpressing adenovirus and FSP1 shRNA lentivirus were used as described.18 (link) The FSP-1 expression adenovirus was kindly provided by Dr. TC He (University of Chicago).
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Cardiac Fibroblast Protein Extraction and Western Blot Analysis

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Proteins were extracted from cardiac fibroblasts or mouse myocardium by RIPA lysis buffer (Applygen, China) containing protease inhibitor cocktail (Sigma, Santa Clara, CA, USA). Total protein concentrations were measured by BCA assay (Pierce, USA). Proteins were then separated by SDS-PAGE and transferred to PVDF membranes (Merck Millipore, Germany). Membranes were incubated with primary antibodies collagen type I, Fibronectin (FN), Sec61α (Abcam, Cambridge, MA), TGF-β1, a-smooth muscle actin (α-SMA), connective tissue growth factor (CTGF) (Santa Cruz Biotechnology, CA, USA), α-Tubulin (Bioworld, USA), or Nogo-C (Abmart, China) and then incubated with secondary antibodies goat anti-rabbit IgG, goat anti-mouse IgG, rabbit anti-goat IgG (Biodragon, China), or mouse anti-rabbit IgG LCS (Abbkine, California, USA). Immunoblots were evaluated using the Chemi Doc XRS + instrument (Bio-RAD, Hercules, CA, USA).
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Immunohistochemical Analysis of TGF-β1, bFGF, and CD31

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Paraffin-embedded tissues were sectioned (5 µm), and antigen retrieval was performed using 10 mM sodium citrate buffer. Endogenous peroxidase activity was blocked by treating sections with 0.3% hydrogen peroxide in methanol for 15 min. Tissues were treated with polyclonal rabbit anti-transforming growth factor beta 1 (TGF-β1), anti-basic fibroblast growth factor (bFGF), and anti-platelet-endothelial cell adhesion molecule-1 (CD31) antibody (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA; dilution 1:300) overnight at 4°C. Specific labelling was detected with a peroxidase-conjugated goat anti-rabbit IgG and avidin-biotin peroxidase complex. Slides were then mounted with coverslips and analyzed by two blinded pathologists. The expression of TGF-β1 and bFGF was assessed by immunoreactive cell density plus expression intensity. Immunoreactive cell density was graded semi-quantitatively as 1) less than 10% per field, 2) 10–30% per field, 3) 30–70% per field, or 4) more than 70% per field, whereas expression intensity was graded as 1) mild, 2) moderate, or 3) severe. At the same time, the number of microvessels was counted to assess CD31 expression. All assessments were performed in a blind manner by two investigators, and five regions of interest in each specimen were used for each determination.
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8

Wound Healing Protein Expression Analysis

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Tissue samples taken from the wound area and 2 mm surrounding skin on days 0 and 7 after wound healing were fixed in formalin and embedded in paraffin. Frozen Sects. (4 μm thick) were cut, fixed in 4% paraformaldehyde for 15 min, then incubated with Triton X-100 for 10 min at room temperature. Sections were incubated with primary antibodies against EGR1 (1:100, Santa Cruz Biotechnology), TGF-β1 (1:150, Santa Cruz Biotechnology) or SOCS7 (1:100, Santa Cruz Biotechnology) at 4 °C overnight. The following day, samples were incubated with HRP-conjugated second antibodies for 30 min at room temperature, followed by the DAB Detection System kit (Servicebio, Wuhan, China). Cell nuclei were counterstained with hematoxylin. Samples were visualized using light microscopy.
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9

Molecular Mechanisms of Fibrosis Regulation

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Antibodies to p‐PDGFR‐β, p‐VEGFR2, p‐Src, Src, p‐STAT3, STAT3, p‐Smad3, Smad3, TGF‐β1, p‐NF‐κBp65, p‐Akt, Akt and β‐Actin were purchased from Cell Signaling Technology. TGF‐β1 and antibodies to type I collagen and fibronectin were purchased from Santa Cruz Biotechnology. p‐FGFR1 antibody was purchased from Life Span Biosciences. NF‐κBp65 antibody was purchased from Prosci Inc. Antibodies to CD68, CD31, MMP‐2, TIMP‐2, E‐cadherin, vimentin, Snail, Twist, and MCP‐1, TNF‐α, IL‐1β and IL‐6 ELISA assay kits were purchased from Abcam Inc. Nintedanib was purchased from Cayman. α‐SMA antibody, CG, Cell Counting Kit‐8 (CCK‐8) proliferation assay kit and all other chemicals were purchased from Sigma.
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10

Western Blot Analysis of Myocardial Protein Expression

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Myocardial tissue was homogenized with RIPA lysis buffer (Santa Cruz Biotechnology) and protein concentration of the supernatants was determined by BCA Assays (Pierce Biotechnology). Equal amounts of protein (50 μg) were electrophoresed on a 14% SDS-polyacrylamide gel and then electrophoretic-ally transferred on to a PVDF membrane (Millipore). After blocking with 5% non-fat dried skimmed milk in TBS (Tris-buffered saline) containing 0.05% Tween 20 at room temperature (25°C) for 1 h, the membranes were incubated at 4°C with primary antibodies at 1:1000 dilutions on a rocking platform overnight. Antibodies used were phospho-Smad2, Smad2, phospho-TAK1 (TGF-β-activated kinase 1), TAK1, phospho-p38 MAPK (mitogen-activated protein kinase), p38 MAPK, phospho-ERK (extracellular-signal-regulated kinase) 1/2, ERK1/2, phospho-JNK (c-Jun N-terminal kinase), JNK (all from Cell Signaling Technology), TGF-β1 and β-actin (Santa Cruz Biotechnology). Blots were incubated with HRP (horseradish peroxidase)-labelled secondary antibodies (anti-mouse IgG or anti-rabbit IgG) for 1 h at room temperature, and signals were detected using Pierce ECL (enhanced chemiluminescence) Western Blotting Substrate. Membrane was exposed to Fuji radiograph film, and signal intensities were analysed with the NIH ImageJ software (version 1.38×).
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