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Turboblotter

Manufactured by Cytiva
Sourced in Germany, United Kingdom

The TurboBlotter is a versatile and efficient laboratory equipment designed for blotting applications. It provides a consistent and reliable method for transferring proteins, nucleic acids, or other biomolecules from gels to membranes. The TurboBlotter's core function is to facilitate the rapid and efficient transfer of these biomolecules, enabling researchers to perform various downstream analyses and experiments.

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12 protocols using turboblotter

1

Generation of Plin2 Floxed Mice

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The linearized Plin2-Flox-Neo vector was electroporated into 129/svJEv ES cells. ES cell clones with the desired homologous recombination event were identified by Southern blotting using Turbo blotter (Schleicher & Schuell) followed by hybridization of membranes with [α-32P]dCTP (PerkinElmer, Wellesley, MA) radiolabeled probes generated with the Megaprime DNA labelling System (Amersham Biosciences). Targeting efficiency was 10 positive events of 96 screened clones.
Animal use for generation of the floxed Plin2 model was registered with and approved by the NIDDK Animal Care and Use Committee (plan #K039-LCDB-10) and followed the national Guide for the Care and Use of Laboratory Animals. Positive ES cells were microinjected into blastocysts derived from C57BL/6J females and transferred to pseudopregnant recipients. Chimeric offspring were mated with C57BL/6J mice for germline transmission. The presence of the targeted allele in the agouti-colored offspring was confirmed by PCR and Southern blot hybridization. Floxed Plin2 mice (Plin2flox-Neo) were mated with mice expressing MMTV-Cre recombinase to obtain mice with global deletion of Plin2 (Plin2−/−) mice, which were confirmed for deletion of exons 3, 4, and 5 by PCR, RT-PCR, and Southern blot hybridization (see Supplemental Fig. S1).
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2

RNA Expression Analysis by Northern Blot

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Total RNA (5 µg) were run on denaturing agarose gels containing 0.25 M formaldehyde, and the gels were stained with ethidium bromide (EtBr) to visualize 23S and 16S rRNA. The fractionated RNA was transferred to nylon membranes (Schleicher & Schuell, Germany) using a Turboblotter (Schleicher & Schuell, Germany). The mRNA levels were determined by hybridizing the membrane with a gene specific, 32P-labeled probe (Takara, Japan) prepared by PCR amplification with their respective primer pair as indicated in Table S5. Autoradiography was conducted using an IP plate (Fujifilm, Japan) and a Multiplex Bio-Imaging system (FLA-7000; Fujifilm, Japan).
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3

Quantitative Southern Blotting for HBV DNA

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Southern blotting was performed as described earlier using the International Coalition to Eliminate HBV harmonized protocol.27 (link),54 Briefly, total DNA was extracted using the Hirt extraction protocol followed by treatment with Exo I/III. All of the samples were quantified by Qubit. Mitochondrial NADH dehydrogenase (ND2, TaqMan Assay ID: Hs02596874_g1, Life Technologies) levels were quantified by qPCR and used to normalize loading. Samples were separated on 1.2% agarose gel in 1× Tris-acetate EDTA buffer at 15 V. Depurination followed by denaturation and neutralization was performed in gel before transferring to a nylon membrane with 20× saline-sodium citrate buffer using a Whatman TurboBlotter. DNA was crosslinked to the membrane by ultraviolet light at 120 mJ/cm2. The membrane was hybridized overnight at 55°C with DNA probes. The hybridized signal was amplified using the QuantiGene Singleplex Assay kit (Life Technologies) and detected by a ChemiDoc imager.
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4

RNA Integrity and Northern Blotting

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RNA integrity and Northern blotting was performed as previously described4 (link). Total RNA was isolated from Hek293 or C2C12 cells using Trizol (Ambion). Twenty microgram RNA was resolved on 2% glyoxal agarose gel and transfered to nylon membrane using Turboblotter (Whatman) as per manufacturers protocol. Radiolabeled DNA probe was synthesized by asymmetric PCR using Firefly luciferase as template DNA. Probe and primers used are available upon request. Northern blot from in vitro experiment was performed from 2 independent experiments.
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5

Northern Blot Analysis of Ccdc181 Expression

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Total RNA was extracted from different mouse tissues and testes of different mouse mutants using the RNeasy Plus Mini Kit (Qiagen). Approximately 6 μg RNA were separated on an agarose gel under denaturing conditions. Separated samples were transferred onto a Hybond-N+ membrane (Amersham) using the TurboBlotter (Whatman) and cross-linked at 80 °C for 120 minutes. Hybridization and signal detection was performed using DIG DNA Labeling and Detection Kit (Roche) according to the manufacturer’s instructions. Briefly, hybridization was performed overnight at 50 °C in DIG Easy Hyb buffer (Roche), mixed with denatured dig-labelled Ccdc181 cDNA probe. Hybridized probes were labeled with alkaline phosphatase-coupled digoxigenine antibody (1:10,000) and detected using CDP Star Reagent (New England Biolabs) according to manufacturer’s protocol. The Ccdc181 cDNA probe was amplified with the following primers: nbCcdc181-for (5’-GATGAAGATAAAGATATTGATTCAAAAGAGAG-3’) and nbCcdc181-rev (5’-GTTGTAGTGGTCGGTGAAGC-3’) and dig-labelled using the PCR DIG Probe Synthesis Kit (Roche) according to manufacturer’s protocol.
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6

Quantitative Northern Blot Analysis

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Typically, 10 μg of total RNA (after staining with 1 μg/ml ethidium bromide) was resolved by electrophoresis using 1.2% (wt/vol) formaldehyde–agarose gel at 5 V/cm for 4 h. RNA on the gel was then transferred overnight to a positively charged nylon membrane (Ambion, United States) using a downward transfer system (TurboBlotter, Whatman, United Kingdom). The nylon membrane was baked at 80°C for 1 h. M3 probe was prepared by PCR using a pair of primers complementary to 3,751 and 4,285 in gal coordinates. Probe DNA was labeled with 32P. Hybridization procedures followed the manufacturer’s instructions (Ambion, United States). RNA bands were quantified using the software JMOL (NIH).
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7

Northern Blot Analysis of RNA Transcripts

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Northern analysis was performed as previously described (Gruner et al., 2016 (link)) using P32 labeled DNA probes. Briefly, Glyoxal-DMSO was used to denature RNA and electrophoresis was performed using 1% BPTE agarose gels. Transfer to Nylon membrane was performed using Turboblotter (Whatman). After transfer and washing, blot was crosslinked using a UV Stratalinker 1800 (Stratagene). DNA probes were prepared using Megaprime DNA labeling system (GE Healthcare, RPN1606) labeled with α32-P dCTP (Perkin Elmer). Probing was performed in a hybridization oven overnight at 45–55°C using ULTRAhyb hybridization buffer (ThermoFisher, AM8669), followed by 3–4 washes at 50–60°C and exposure on phosphoscreen. Image acquisition was performed using a FLA7000IP Typhoon Storage Phosphorimager using Typhoon FLA 7000 control software Version 1.3 (GE Healthcare).
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8

Quantitative Analysis of HBV DNA

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Cells (2 × 107) were processed using a modified Hirt extraction followed by ExoI+III digestion (45 ). Samples were then quantified by Qubit, and ND2 qPCR was used to normalize the seeding amount to mitochondrial DNA. Samples were run in a 1.2% agarose gel for 16 h at 15 V. Samples in the agarose gel were depurinated using HCl followed by NaOH treatment and neutralization before transfer to a nylon membrane using a Whatman Turbo blotter. Membranes were blocked and incubated with branched-DNA probes to detect the negative-strand HBV DNA with modifications of the protocol described in reference 46 (link) or with digoxigenin (DIG) DNA probes as described in reference 47 (link).
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9

Fission Yeast Telomere Length Analysis

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Fission yeast genomic DNA was digested with EcoRI, resolved on a 1% agarose gel, and then transferred onto a Hybond-XL membrane (GE Healthcare) using a TurboBlotter (Whatman). The membrane was UV autocrosslinked at 120 mJ/cm2 (Stratalinker 1800). The 0.3-kb ApaI-EcoRI fragment of pTELO [81 (link)] was used as a template to generate a probe using the Takara Random Primer DNA Labeling Kit (Takara).
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10

Northern Blot Analysis of RNA Transcripts

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Northern analysis was performed as previously described (Gruner et al., 2016 (link)) using P32 labeled DNA probes. Briefly, Glyoxal-DMSO was used to denature RNA and electrophoresis was performed using 1% BPTE agarose gels. Transfer to Nylon membrane was performed using Turboblotter (Whatman). After transfer and washing, blot was crosslinked using a UV Stratalinker 1800 (Stratagene). DNA probes were prepared using Megaprime DNA labeling system (GE Healthcare, RPN1606) labeled with α32-P dCTP (Perkin Elmer). Probing was performed in a hybridization oven overnight at 45–55°C using ULTRAhyb hybridization buffer (ThermoFisher, AM8669), followed by 3–4 washes at 50–60°C and exposure on phosphoscreen. Image acquisition was performed using a FLA7000IP Typhoon Storage Phosphorimager using Typhoon FLA 7000 control software Version 1.3 (GE Healthcare).
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