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5 protocols using e coli bl21 de3

1

Cloning and Expression of P. gulae fimA Gene

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P. gulae genomic DNA was isolated as previously described [3 (link)] and used as a template for amplifying the entire fimA gene by PCR. The primers used for PCR were constructed from the sequences of the fimA genotypes [3 (link)] as follows: type A forward primers, 5′-GCG CGC GAA TTC GAG ATG AAA AAG ACT AAG-3′ and reverse primers, 5′-GCG CGG TTT AAG CTT TGA TTA CCA AGT AGC-3′; type B forward primers, 5′-GCG AAC GGA TCC AAG ATG AAA AAG ACT AAG-3′ and reverse primers, 5′-CGC TCT CTC GAG AGC TGA TTA CCA AAT-3; type C forward primers, 5′- ATC GAT ATC CAC TTT TAA AAC AAA AAA GAG-3′ and reverse primers 5′-TTT AGT CGT TTG ACG GGT CGA TTA CCA AGT-3′. Each amplified DNA was cloned into pGEM-T Easy Vector (Promega, Madison, WI), then digested with the appropriate restriction enzyme for ligation into the pET 42a (+) glutathione S-transferase (GST) gene fusion-protein expression vector (Novagen, Madison, WI, USA). The ligated vector was transformed into E. coli DH5α and colonies were selected on LB agar plates containing 50 µg of ampicillin/ml. Plasmid DNA was obtained using the Wizard® Plus SV Minipreps DNA Purification System (Promega). Each recombinant plasmid was transformed into E. coli BL21 (DE3) (Nippon Gene) and the colonies were selected as described above.
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2

Recombinant Production of Human Tau40 in E. coli

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A pET23a-hTau40 gene was constructed by ligation of a synthesized hTau40 gene optimized for E. coli expression (Thermo Fisher, MA, USA) with a DNA fragment obtained from the expression vector pET-23a(+). Human Tau40 was expressed in E. coli BL21(DE3) (Nippon gene Co., Ltd, Tokyo, Japan) transformed with the pET23a-hTau40. Cells were disrupted by ultrasonication in purification buffer (50 mM Tris-HCl, pH 7.4, containing 2mM EDTA, 2mM DTT, and 0.2 mM PMSF) and centrifuged at 22,000 × g for 20 min. NaCl (final 200 mM) was added to the supernatant and heated at 85 °C for 10 min. After centrifugation (22,000 × g, 20 min), streptomycin sulfate (final 2.5%) was added to the supernatant and centrifuged at 22,000 × g for 20 min. Supernatants were dialyzed overnight and applied onto a CM sepharose column (GE Healthcare Life Sciences, Buckinghamshire, UK) with 50 mM Tris-HCl containing 2mM EDTA and 2mM DTT. Samples were eluted with a linear gradient of 0–0.5 M NaCl. The sample solution was dialyzed by 0.05 mM HCl and lyophilized. Molecular weight of hTau40 was assessed by SDS-PAGE and ESI-MS.
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3

Bioactive Compounds from A. sieboldiana Seeds

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A. sieboldiana seeds from the Forestry and Forest Products Research Institute were used. Benlate wettable powder was purchased from Sumitomo Chemical Garden Products. Ampicillin sodium, kanamycin sulfate, EtOAc, isopropyl-1-thio-β-d-galactopyranoside (IPTG), and methanol (MeOH) were purchased from FUJIFILM Wako Pure Chemical. Streptomycin sulfate, p-coumaric acid (1), ferulic acid (2), caffeic acid (3), sinapinic acid (4), dihydro-p-coumaric acid (5), and naringenin were purchased from the Tokyo Chemical Industry. trans-Cinnamic acid (6) was purchased from Sigma-Aldrich. PrimeSTAR® Max DNA Polymerase, Escherichia coli JM109, restriction enzymes (NdeI, BamHI, BglII) and T-Vector pMD19 were purchased from Takara Bio. A-overhang mixture used was included in the Mighty TA-cloning Reagent Set for PrimeSTAR® from Takara Bio. pET23a(+) DNA and pETDuet-1 DNA were purchased from Novagen. The restriction enzyme NcoI and E. coli BL21(DE3) were purchased from NIPPON GENE. HPLC-grade acetonitrile (CH3CN) was purchased from Kanto Chemical. LCMS-grade CH3CN was purchased from Supelco.
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4

Expression and Purification of Human PRS

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The expression plasmid of human PRS (residues 998–1512, Genbank Accession No. NM_152621) was constructed in a pET21a vector (Novagen, San Diego, CA, USA) to express in E.coli BL21 (DE3) (Nippongene, Tokyo, Japan) as a fusion protein with His-Avi-tag at N-terminus. After culture, the cells were homogenized in a lysis buffer containing 50 mM Tris-HCl (pH 8.0 at 25°C), 150 mM NaCl, 5 U/mL Benzonase, 20 mM imidazole, and 1 mM DTT. Cell homogenates were centrifuged, and the supernatant was applied to NiNTA purification, followed by gel filtration with Superdex200. Proteins were stored in a buffer containing 50 mM Tris-HCl (pH 8.0 at 25°C), 150 mM NaCl, 10% glycerol, and 1 mM DTT at -80°C. The protein concentration was determined with the BCA Protein Assay Kit (Pierce Biotechnology, Inc., Rockford, IL, USA) according to the instruction manual.
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5

Heterologous PUFA Production in E. coli

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All chemicals, primers, and enzymes were obtained from the same suppliers as described previously. [6] . PUFA production was analyzed by GC/MS as the same methods. [6] Bacterial strains, media, and plasmids. Escherichia coli XL1-Blue (Nippon Gene Co. Ltd., Tokyo, Japan) was used for construction of plasmids (Supporting Information). An E. coli mutant defective in -oxidation, BLR(DE3)ΔfadE, [5] was utilized for the heterologous PUFA production. E. coli BL21(DE3) (Nippon Gene Co. Ltd.) was used to prepare recombinant enzymes. LB broth medium (Sigma-Aldrich Japan) and terrific broth (TB) medium (Becton, Dickinson and Company, NJ, USA) were used for cultivation. If necessary, 1.5% agar was added into the media. Ampicillin (Ap), chloramphenicol (Cm), kanamycin (Km), and streptomycin (Sm) were added to the media at concentrations of 100, 30, 25, and 20 µg ml -1 , respectively, when needed.
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