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28 protocols using a769662

1

Preparation and Storage of Experimental Compounds

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AICAR (Toronto Chemical Research) was prepared at a concentration of 1.3 × 10−1 M in distilled water and kept at − 20 °C until use. 2-deoxyglucose (Sigma) was prepared at a concentration of 10−1 M in distilled water and used immediately. SBI-0206965 (Sigma-Aldrich), A-769662 (Tocris Bioscience) and the different modulator candidates were prepared in DMSO (Sigma). NA (Sigma Aldrich) was prepared in a saline-ascorbic solution (0.9% NaCl/0.01% ascorbic acid), Ach and L-NAME (Sigma Aldrich) were prepared in 0.9% NaCl solution. A stock solution (10−2 M) was prepared for each of them and stored at − 20 °C until use (maximum 3 months).
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2

Investigating Sorafenib and Cellular Signaling

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Sorafenib was purchased from Sigma‐Aldrich (St. Louis, MO, USA). The compound A‐769662 and capsaicin were purchased from Tocris Bioscience (Bristol, UK). The primary antibodies anti‐CD133, anti‐ALDH1A1, anti‐pAkt‐ser473, p‐mTOR, pAMPKα1‐thr172, pACC‐ser79, anti‐cyclin D1, anti‐PGC1α, and anti‐PPARγ and the antibodies against the corresponding total forms were obtained from Cell Signaling Technology (Danvers, MA, USA). The primary antibody anti‐β‐catenin was purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). The primary antibody anti‐Hif‐1α was purchased from Novus (St. Louis, MO, USA). Anti‐alpha fetoprotein and peroxidase‐labelled secondary anti‐mouse IgG were purchased from Sigma‐Aldrich, and anti‐rabbit IgG was purchased from Calbiochem (San Diego, USA).
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3

Apoptosis Pathway Biomarkers Analysis

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Antibodies (Abs) against apoptosis inducing factor (AIF), phosphorylated AMPK (pAMPK), and total AMPK (tAMPK) were purchased from Cell Signaling (USA). Abs against endonuclease G (endo G) and α-tubulin were purchased from Abcam (UK). The anti-nitrotyrosine Ab was purchased from Upstate Biotechnology (USA). A769662 and Tocrisolve 100 were purchased from Tocris Bioscience (Bristol, UK). The 2-deoxy-D-glucose (2DG) was from Sigma-Aldrich (USA). All other reagents were purchased from Calbiochem (USA).
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4

Chondrocyte culture and stimulation

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Human IL-1β was purchased from PeproTech (Rocky Hill, NJ, USA). N6-(1-iminoethyl)-L-lysine hydrochloride (L-NIL), forskolin, 8-Bromoadenosine-3′,5′-cyclic monophosphate sodium salt (8-Bromo-cAMP), dorsomorphin dihydrochloride, and A769662 were all purchased from Tocris Bioscience (Bristol, UK). Forskolin and A769662 were dissolved in DMSO/water (final DMSO dilution 1:200 and 1:5000, respectively), all other substances were dissolved in water. PGE2 was from Cayman Chemical (Ann Arbor, MI, USA) and was dissolved in DMSO/water (final DMSO dilution 1:5000). Pronase E was obtained from Merck KGaA (Darmstadt, Germany), and collagenase P from Roche Diagnostics GmbH (Mannheim, Germany). The chondrocytes culture medium contains Chondrocyte Basal Medium + 10% Chondrocyte Growth Medium SupplementMix (both from PromoCell GmbH, Heidelberg, Germany) + 1% Penicillin/Streptomycin Solution (Life Technologies Europe BV, NN Bleiswijk, Netherlands).
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5

AICAR, A769662 and Compound C Protocol

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AICAR (5-aminoimidazole-4-carboxamide riboside), A769662 and Compound C were purchased from Tocris. All other chemicals were purchased from Sigma-Aldrich Co.
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6

Pharmacological Activators of AMPK Pathway

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Cyclohexamide (350 μM, Cat No. 0970), HHT (50 μM, Cat No. 1416), and A769662 (200 μM, Cat No. 3336) were all obtained from Tocris (Minneapolis, MN). AICAR (2mM, Cat No. 10010241) was obtained from Cayman Chemical Company (Ann Arbor, MI). Metformin (200 mg/kg, intraperitoneal (IP) dose) was obtained from LKT labs. The vehicle for CHX, HHT, AICAR, and A769662 used in culture was sterile 1× PBS. The vehicle for IP metformin dosing was sterile 0.9% saline. For a complete list of reagents and sources see Table 1.
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7

Modulation of Cellular Pathways with Pharmacological Agents

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Cyclohexamide (350 μM, Cat No. 0970), HHT (50 μM, Cat No. 1416), and A769662 (200 μM, Cat No. 3336) were all obtained from Tocris (Minneapolis, MN). AICAR (2 mM, Cat No. 10010241) was obtained from Cayman Chemical Company (Ann Arbor, MI). Metformin (200 mg/kg, intraperitoneal (IP) dose) was obtained from LKT labs. The vehicle for CHX, HHT, AICAR, and A769662 used in culture was sterile 1X PBS. The vehicle for IP metformin dosing was sterile 0.9% saline. For a complete list of reagents and sources see Table 1.

Key Reagents List.

Reagent or resourceConcentration usedSourceIdentifier
Antibodies
anti-βIII – Tubilin Rabbit1:1000Cell Signaling Technology5568
Anti-Puromycin Mouse1:5000MilliporeMABE343
Anti-Rck/p54/p54 Rabbit1:2000Cell Signaling Technology9407
Goat Anti Mouse 5461:1000ThermoFisher ScientificA-11030
Goat Anti Rabbit 4881:1000Life TechnologiesA11034



Drugs
A769662200 μMTocris3336
AICAR2 mMCayman Chemical10010241
Cyclohexamide350 μMTocris0970
HHT50 μMTocris1416
Metformin200 mg/kgLKT Labs1115-70-4



Reagents
Puromycin1 μMAlomone LabsP-540
Digitonin0.00036%Sigma-AldrichD141
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8

Hedgehog Pathway Activation and Regulation

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Sag was purchased from Adipogen Life Sciences (Liestal, Basel, Switzerland). For Hh pathway activation, DAOY cells were incubated overnight in serum-free medium, containing 1% BSA, and then exposed to Sag (200 nM) for the indicated time points.
AICAR was purchased from Cayman Chemicals, A-769662 from Tocris Bioscience, Metformin and 2-deoxyglucose from Sigma-Aldrich.
DAOY cells were pre-treated with MG132 (Calbiochem, Merk Group) to prevent protein degradation, and then incubated with A-769662. Cells were treated with cycloheximide (CHX, Sigma-Aldrich) and A-769662 as described in the text. The total cell lysates were analyzed by western blot using the indicated antibodies.
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9

Cytotoxic Capacity of NK Cells

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The cytotoxic capacity of NK cells was assessed using the E-Cadherin expressing breast cancer epithelial cell line MCF-10A as target. Briefly, 20,000 MCF-10A cells were plated/well of a 96 flat-bottom plate 24 hours prior to the cytotoxicity assay. On the day of the assay, MCF-10A cells were labeled with Calcein-AM (Sigma-Aldrich) at 10μM for 1 hour before co-culture with NK cells in complete medium containing 500 IU/ml rhIL-2 (Miltenyi Biotech) and as described elsewhere (34 (link)). NK cells transfected with siRNA specific for KLRG1 or scrambled control siRNA for 36 hours were pre-treated with the AMPK agonist A769662 (Tocris Bioscience) at 150 μM or equivalent DMSO as negative control for 2 hours before being added to the target cells. Effector and target cells were combined at a ratio of 40:1 in triplicate and cultured in complete medium containing 500 IU/ml rhIL-2 (Miltenyi Biotech) for 4 hours. After 4 hours of co-culture fluorescence was measured in 75 μl of cell culture supernatant using a Spectramax Gemini spectrofluorimeter. Specific lysis was calculated as % killing = (test release–spontaneous release) / (max release–spontaneous release) x 100.
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10

Mitochondrial Dysfunction Evaluation Protocol

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NaIO3 (sodium iodate), N-acetyl cysteine (NAC), trolox, 3-AB (3-aminobenzamide), DPQ (3,4-dihydro-5-[4-(1-piperidinyl) butoxy]-1(2H)-isoquinolinone), DCFDA (dichlorofluorescein diacetate), DHE (dihydroethidium), oligomycin, FCCP (carbonyl cyanide-p-trifluoromethoxyphenylhydrazone), rotenone, antimycin A, and U0126 were obtained from Sigma-Aldrich Co (St Louis, MO, USA). MitoSOX and Mitotracker green were purchased from Thermofischer scientific (Waltham, MA, USA). MitoPY1 and A769662 were obtained from Tocris Biosciences (Bristol, UK). Metformin was purchased from Medchem express (Monmouth Junction, NJ, USA). The antibodies specific for phospho-ERK1/2 (T202/Y204), ERK1/2, phosphor-Akt (Ser 473), Akt, phospho-dynamin-related protein (DRP)-1 (S616), DRP-1, γH2AX and Tom 20 were purchased from Cell Signaling Technology (Beverly, MA, USA). The β-actin antibody was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Dulbecco’s Modified Eagle’s Medium/Nutrient Mixture F-12 (DMEM/F12), penicillin, streptomycin and trypsin-EDTA were from Invitrogen (Rockville, MD, USA). The ECL reagent (Western blotting lightening chemiluminescence reagent plus) was purchased from PerkinElmer (Wellesley, MA, USA).
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