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11 protocols using 3h palmitic acid

1

Palmitic Acid Oxidation Assay

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The experiment procedures were performed as a previous study (Djouadi et al., 2003 (link)). In brief, at least 100,000 cells were seeded and treated with 1µM AZD1480, human control or STAT3 siRNA for 24h. For the oxidation assay, cultured cell layers or tumorspheres were washed three times with HBSS. Then, 200µLof [3H]-palmitic acid (1 mCi/mL, PerkinElmer Inc) bound to fatty-acid free albumin (100 µM; the ratio of palmitate:albumin is 2:1) and 1 mM l-carnitine were added to each well. Incubation was carried out for 2h at 37°C. After incubation, the media was collected and added to a tube containing 200 µLof cold 10% trichloroacetic acid. The tubes were centrifuged 10 min at 3,000g at 4°C and aliquots of supernatants (350 µL) were removed, neutralized with 55 µL of 6N NaOH, and applied to an ion exchange column loaded with Dowex 1×2 chloride form resin (Sigma Aldrich). The radioactive product was eluted with water. Flow-through was collected and radiation was quantified using liquid scintillation counting. Radiation count was normalized to amount of protein, as quantified by BCA assay (Pierce).
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2

Radiolabeled Membrane Protein Extraction

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Cultures grown to early exponential phase in TYG broth were incubated with 100 μCi 3H-palmitic acid (PerkinElmer) for 2 h at 37°C. Cells were collected by centrifugation (4,000 x g, 20 min, 4°C), washed twice with PBS, and divided into two aliquots. One aliquot was treated with 2 mg/ml PK as described above. After PK treatment, both aliquots were lysed by sonication and centrifuged (18,000 x g, 20 min, 4°C) to remove unbroken cells and debris. The cleared lysates were then centrifuged at 100,000 x g for 45 min at 4°C, and the resulting membrane pellets were resuspended in PBS. Proteins were resolved by SDS-PAGE on 8–16% Tris-glycine minigels (Life Technologies). Gels were fixed, treated with Enlightening enhancer (Kodak) and dried. Radiolabeled proteins were then detected using Kodak Biomax XAR film.
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3

Quantification of Cellular Fatty Acid Uptake

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Cells were first rinsed with HBBS before being treated with a 200 µL mixture of [3H]-palmitic acid (1 mCi/mL, Perkin Elmer) linked to fatty-acid free albumin (100 µM; maintaining a palmitate to albumin proportion of 2:1) and 1 mM l-carnitine. This complex was then left to incubate for a duration of 2 h at 37 °C. Subsequently, the supernatant was retrieved and added to a tube filled with 200 µL of chilled 10% trichloroacetic acid. The tubes then underwent centrifugation for 10 min at 3000 × g at 4 °C, after which aliquots of the supernatants (350 µL each) were collected and neutralized by adding 55 µL of 6 N NaOH. The solution was then transferred onto an ion exchange column filled with Dowex 1X2 chloride form resin (Sigma Aldrich, St. Louis, MO). The radioactive constituent was then extracted with water. Finally, the flow-through was collected and the radiation level was determined using liquid scintillation counting.
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4

Quantification of Cellular Fatty Acid Uptake

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Cultured cells were washed with HBSS and incubated with 200 µL of [3H]-palmitic acid (1 mCi/mL, PerkinElmer) bound to fatty-acid free albumin (100 µM; the ratio of palmitate:albumin is 2:1) and 1 mM l-cartinine. The complex was incubated for 2 h at 37 °C. The supernatant was collected after incubation and added to a tube containing 200 µL of cold 10% trichloroacetic acid. The tubes were centrifuged 10 min at 3000g at 4 °C, and aliquots of supernatants (350 µL) were removed, neutralized with 55 µL of 6 N NaOH and applied to an ion exchange column loaded with Dowex 1X2 chloride form resin (Sigma-Aldrich). The radioactive product was eluted with water. Flow-through was collected and radiation was quantified using liquid scintillation counting.
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5

Lipid Signaling Pathway Analysis

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Fetal bovine serum, penicillin/streptomycin, and DMEM were purchased from Invitrogen. PAO, rapamycin, and SP600125 were obtained from Calbiochem, and [3H]-palmitic acid was from Perkin Elmer Life Sciences. 1-palmitoyl-2-arachidonoyl-sn-glycerol-3-phosphate (PA) dissolved in chloroform was purchased from Avanti Polar Lipids (Alabaster, AL, USA). The following polyclonal antibodies from Cell Signaling (Beverly, MA, USA) were used: PLD1, PLCγ, p-PLCγ, Src kinase, p-Src kinase, mTOR, p-mTOR, p-p70S6K antibody, and p70S6K. GAPDH and PLCγ were from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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6

Quantification of Protein Palmitoylation

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Transfected cells were incubated for 4 h in medium containing 0.5mCi/ml [3H]palmitic acid (Perkin Elmer) and 0.1% BSA (fatty acid free). The GFP-tagged proteins were then immunoprecipitated with magnetic microbeads coupled to GFP antibody (Miltenyi Biotech). Immunoprecipitated proteins were separated by SDS-PAGE and transferred to nitrocellulose membranes. [3H]palmitate present on the recovered GFP-tagged proteins was detected using a Kodak Biomax Transcreen LE intensifier screen.
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7

Quantifying CFTR Palmitoylation in Cells

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Cells were grown in 6-well or 10 cm plates. Prior to study, tissue culture medium was replaced with DMEM supplemented with 2% dialyzed FBS and 1% non-essential amino acids for 1 h at 37°C. Following serum deprivation, cells were labeled with 500 μCi/ml 3H-palmitic acid (PerkinElmer, Waltham, MA) for 4 h in DMEM as above, rinsed, and collected in cold PBS with lysis in RIPA buffer. CFTR was immunoprecipitated using 24–1 or 10B6.2 antibody conjugated to protein A/G agarose (Thermo Scientific Pierce Protein Biology Products, Rockford, IL), followed with rinsing and release by 37°C incubation in 4X Laemmli sample buffer containing 10% β-mercaptoethanol. Protein was separated by SDS-PAGE (6% acrylamide) and CFTR detected using autoradiography (Biomax MR film (Kodak) for 3–6 months though a Kodak Biomax transcreen-LE intensifying screen at −80°C). Quantitation was performed with ImageLab software (Bio-Rad Laboratories, Hercules, CA).
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8

Measuring Fatty Acid Oxidation in Tissues

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Sciatic nerve and whole brain were removed and split in half for 2× cortex and 2× cerebellum pieces. Tissues were then weighed and placed in KH buffer containing 25 mM NaHCO3, 118 mM NaCl, 4.7 mM KCl, 1.2 mM MgSO4, 1.2 mM NaH2PO4, 1.2 mM CaCl2 and 2.5 mM glucose. Tissues were kept in buffer on ice until all dissections were completed. Each tissue then transferred to KH buffer plus 2% Fatty acid free BSA and 2.5 mM glucose, with 2 μCi 3H palmitic acid (Perkin Elmer, Waltham, MA, USA) and incubated at 37°C for 1 hr. The buffer was collected and hydrolyzed 3H palmitic acid (as 3H water) was extracted. 100 μL of buffer was added to 100 μL of 10% trichloroacetic acid (TCA), vortexed, incubated at RT for 15 min, spun at 16,000 rpm for 10 min, and the supernatant collected into a new tube. TCA (5%; 100 μL) and 40 μL BSA (10%) was added to the supernatant, vortexed, incubated at RT for 15 min, spun at 16,000 rpm for 10 min, and the supernatant transferred to a new tube. Chloroform:methanol (2:1, 750 μL) was added to the supernatant, along with KCl: HCl (2 M each, 300 μL), vortexed and spun at 16,000 rpm for 10min. The upper layer (~600 μL) was collected into 5 ml EcoLume, mixed, and counted in a liquid scintillation counter. After subtracting background cpm, the sample cpm was divided by the tissue weight to determine fatty acid oxidation capacity.
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9

Quantifying Radiolabeled Ceramide Synthesis

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At initiation of treatment, [3H]-palmitic acid (1 μCi/ml medium) purchased from Perkin Elmer (32.0 Ci/mmol) was added to treated and untreated samples. At the indicated time points, lipids were extracted according to Bligh and Dyer method [49 (link)], N2 dried, and resuspended in 60 μl chloroform:methanol (2:1); 40 μl were spotted on 20 cm silica gel TLC plates. Plates were developed with ethylacetate:isooctane:acetic acid (90:50:20, v/v), air dried, and sprayed lightly with En3hance® (Perkin Elmer) to enhance tritium readings. [3H]-Cer spots were visualized by iodine vapor mark. Radioactivity was visualized by autoradiography after 96 h at −80°C and the [3H]-Cer spots were scraped into scintillation vials containing 4 ml of scintillation fluid and counted on a Packard scintillation counter. [3H]-Cer counts were normalized to lipid phosphate levels.
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10

Detailed Biochemical Assay Reagents

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Reagents were obtained from the following sources: Cholesterol LiquiColor Test (Enzymatic) from Stanbio (Boerne, TX, USA); bicinchoninic acid assay protein kit from Pierce Biotechnology, Inc. (Rockford, IL, USA); organic solvents were from J. T. Baker (Phillipsburg, NJ, USA); TRIzol reagent and SuperScript II from Invitrogen (Carlsbad, CA, USA); RNeasy kit from QIAGEN (Valencia, CA, USA); SyBr green Taqman PCR kit from Applied Biosystems (Foster City, CA, USA); Odyssey blocking buffer, goat anti-mouse IgG-IRDye 800, donkey anti-goat IgG-IRDye 680, and goat anti-rabbit IgG-IRDye 680 from Li-Cor Biosciences (Lincoln, NE, USA); corticosterone ELISA kit from Cayman Chemical (Ann Arbor, Michigan, USA); progesterone and testosterone ELISA kits from ALPCO (Salem, NH, USA); pregnant mare’s serum gonadotropin (PMSG)/equine chorionic gonadotropin (eCG), and Bt2cAMP from Sigma (St. Louis, MO, USA); 3H2O and 3H-palmitic acid were from PerkinElmer (Waltham, MA, USA). Cortrosyn was from Amphastar Pharmaceuticals Inc. (Rancho Cucamonga, CA, USA).
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