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27 protocols using phosphoramidon

1

Evaluating IL-6 Stability with Protease Inhibitors

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To test for potential degradation of IL-6, 10 µl conditioned culture medium obtained from infection experiments was used either untreated, heat-treated (95°C/5 min), or mixed with 8 µl of different protease inhibitors (or respective controls) and then incubated with 2 µl (0.5 µg/µl) recombinant IL-6 (Peprotech, Rocky Hill) at 37°C. For inhibition of metalloproteases, phosphoramidon (Sigma-Aldrich) was used at a final concentration of 3.4 mM. Nα-Tosyl-L-lysine chloromethyl ketone hydrochloride (TLCK, Sigma-Aldrich), primarily inhibiting serine proteases, was used at a final concentration of 40 mM. Additionally, a proprietary, broad non-metalloprotease inhibitor was used (cOmplete™ Mini EDTA-free Protease Inhibitor Cocktail, Roche, one tab dissolved in 500 µl water).
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2

Quantifying Plasma Neprilysin Activity

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As previously described53 (link), 20 µL of plasma, 10 µL of substrate (5 mmol/L glutaryl-Ala-Ala-Phe-AMC; Peptides International, Louisville, KY, USA) and 50 µL of assay buffer (0.1 mol/L Tris–HCl, pH 7.6) were incubated at 37 °C for 30 min. The reaction was stopped by adding 10 µL of the NEP inhibitor phosphoramidon (0.1 mmol/L; Sigma, Oakville, ON, Canada) and incubating the samples on ice. Background controls were processed in the same manner except that phosphoramidon was added before the incubation at 37 °C. In the next step, the samples were incubated at 37 °C for 30 min with 10 µL of aminopeptidase M (500 mg/L, EMD Millipore, Etobicoke, ON, Canada) and 5 mmol/L EDTA. The reaction products were diluted in 3 mL of assay buffer, and the fluorescence was measured using a Tecan Infinite M1000 plate reader at an excitation wavelength of 360 nm and an emission wavelength of 440 nm. NEP activity was calculated from the difference between the sample (S) and control (C) values with the equation (S—C)/19453 (link).
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3

Detailed Phytochemical Extraction and Analysis

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For extraction, analytical grade solvents, Dichloromethane (DCM), Ethyl Acetate (EtOAc), and Ethanol (EtOH) were purchased from Carlo Erba Reactifs SDS (Val de Reuil, France). The aqueous solutions were prepared using deionized water. For TLC analysis, solvents were obtained from Fisher Scientific, while Sulphuric Acid (H2SO4) and Vanillin standard (98%) were purchased from Sigma-Aldrich (Steinheim, Germany). For HPLC analysis, MEthanol (MeOH), Acetonitrile (can), Water, and Acetic Acid were obtained from Fisher Scientific (Leicestershire, UK). ACN and Formic Acid used for LC–MS analysis were of LC–MS grade (Fisher Scientific, Loughborough, UK), while ultrapure water was obtained from a Milli-Q® purification system (Merck Millipore, Darmstadt, Germany). Dimethyl sulfoxide (DMSO), DPPH (2,2-diphenyl-1-picrylhydrazyl), Gallic Acid used for DPPH Radical Scavenging assay, as well all reagents used for the three enzymatic assays, were purchased from Sigma-Aldrich. Kojic Acid (purity 99%), Elastatinal, and Phosphoramidon were used as the positive control for anti-tyrosinase, anti-elastase, and anti-collagenase assays, respectively, and were also purchased from Sigma-Aldrich.
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4

Podocyte Response to IL-17 and Wnt Signaling

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Podocytes were cultured at 37°C in a water-saturated atmosphere with 5% CO2 for 5 days before initiation of experiments. Podocytes were separately exposed to Dkk1 (R&D Systems) or NS-398 (Sigma Chemical Co., St Louis, MO) in serum-free DMEM containing peptidase inhibitors (1 μM phosphoramidon, 4 μg/mL bacitracin and 1 μM captopril; Sigma) for 15 minutes at 37°C in a water-saturated atmosphere with 5% CO2. The cells were then treated with IL-17 and continuously stimulated with TWS119 (Cayman Chemical, Ann Arbor, MI) or Wnt-3a (R&D Systems) for 8, 12, or 24 hours in DMEM at 37°C. Podocytes were treated with different concentrations of IL-17.
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5

Thermolysin Pseudovirus Transduction Assay

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VSV pseudovirions, normalized for GP expression, were incubated with 200 µg/ml, 2-fold serial dilutions starting with 5 µg/ml, or a single concentration of 1.25 µg/ml of thermolysin (THL) at 37°C for 15 min. The reaction mixtures were immediately placed on ice and diluted 20-fold in growth medium containing 50 µM phosphoramidon (Sigma), a THL inhibitor. THL-treated pseudovirions were evaluated for Vero cell transduction. GFP-positive cells were analyzed by flow cytometry.
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6

Protease Activity Measurement in OMVs

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Protease activity was determined using the Pierce protease activity kit (ThermoFisher Scientific). Ten micrograms of each OMV sample was used, and the rPaAP control was matched to the aminopeptidase activity found in this concentration of OMVs. Protease activity was inhibited by incubating the samples with PI (2× cOmplete protease inhibitor cocktail (Millipore Sigma) and 10 mM phosphoramidon (Sigma) in 20 mM HEPES) for 30 min at 37°C.
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7

Immunodetection of Neuronal Markers

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Mouse monoclonal anti-β-actin (ab3280; Abcam, MA); mouse monoclonal anti-GAPDH (cw0266; CWBio; China); mouse monoclonal anti-HA (H9658; Sigma, St. Louis, MO); mouse monoclonal anti-Flag M2 antibody (F3165; Sigma, St. Louis, MO); mouse monoclonal anti-SIRT1 (8469; Cell Signaling Technology, MA); rabbit polyclonal anti-SIRT1 (2493; Cell Signaling Technology, MA); goat polyclonal anti-TFEB (ab2636; Abcam, MA); rabbit polyclonal anti-TFEB (sc48784; Santa Cruz Biotechnology, CA); mouse monoclonal anti-Aβ1–16 (6E10) (SIG39320, Covance, USA); rabbit monoclonal acetylated-lysine antibody (9814; Cell Signaling Technology, MA); rabbit polyclonal anti-Lamp1 (ab 24170; Abcam, MA); LysoTracker Red (C1046; Beyotime, China); Leupeptin (L2884; Sigma, St. Louis, MO); Chloroquine (C6628; Sigma, St. Louis, MO); Phosphoramidon (R7385; Sigma, St. Louis, MO); Thioflavine-S (T1892; Sigma, St. Louis, MO).
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8

Cleavage of EBOV-GP Pseudotyped Particles

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Cleavage of EBOV-GP–pseudotyped particles was performed by incubating the virus with 200 µg/mL of thermolysin (Sigma) for 1 hour at 37°C. After incubation, the reaction was stopped by adding 1 mM phosphoramidon (Sigma) and incubating the specimens on ice for 20 minutes. For infectivity studies, native and cleaved particles were then added to 2 × 104 HeLa cells/well in 96-well plates, and infection was measured 48 hours later.
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9

Quantification of Aβ Peptides from hiPSC Conditioned Media

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hiPSCs were plated on matrigel pre-coated 12-well plates in triplicate. Two days later, medium was replaced by 500µL of mTeSR Plus supplemented with phosphoramidon (10 µM, Sigma-Aldrich). Twenty-four hours later, conditioned medium was collected in each well and centrifuged at 1000×g for 5 min. The supernatant was supplemented with a cocktail of protease inhibitors (Sigma-Aldrich) and frozen at − 80 °C until use. The quantification of Aβ peptides was performed using the MSD technology (Meso Scale Diagnostics, Rockville, MD, USA) with the V-PLEX Aβ Peptide Panel 1 (6E10) kit according to manufacturer’s instructions. Conditioned media were diluted 1:2 in Diluent 35 and analyzed in duplicate. The plate was analyzed using a MESO QuickPlex SQ 120 instrument (Meso Scale Diagnostics). Aβ quantities were normalized to the total protein amount measured in each sample.
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10

Production and Assay of Recombinant VSV Variants

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Recombinant vesicular stomatitis Indiana viruses (VSVs) expressing eGFP, and EBOV, MARV, or LLOV GP in place of VSV G have been described previously (Miller et al., 2012 (link); Wong et al., 2010 (link); Ng et al., 2014 (link)). VSV pseudotypes bearing glycoproteins derived from VSV, EBOV, BDBV, TAFV, SUDV, and MARV were generated essentially as described previously (Takada et al., 1997 (link)). VSV particles containing GPCL were generated by incubating rVSV-GP-EBOV with thermolysin (200 μg/mL) (Sigma-Aldrich, St. Louis, MO) for 1 hr at 37°C. The protease was inactivated by addition of phosphoramidon (1 mM) (Sigma-Aldrich), and reaction mixtures were used immediately. Infectivities of VSV pseudotypes were measured by manual counting of eGFP-positive cells using fluorescence microscopy at 16–24 hr post-infection, as described (Chandran et al., 2005 (link)). Infectivities of rVSVs were measured in a similar manner, except that NH4Cl (20 mM) was added to infected cell cultures at 1–2 hr post-infection to block viral spread, and individual eGFP-positive cells were manually counted at 12–14 hr post-infection.
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