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8 protocols using tsg101

1

Exosomal Protein Characterization by Western Blot

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Exosome (10 μg) were electrophoresed via 4–15% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes. After, blocking with 5% BSA, the PVDF membranes were incubated overnight at 4 °C with primary antibodies against ALG-2 interacting protein X (Alix), CD63 (Santa Cruz Biotechnology, Dallas, TX, USA), Flotillin 2, tumor susceptibility gene 101 (TSG101), and CD81 (Novus Biologicals, Littleton, CO, USA). Signals were generated using an Enhanced Chemiluminescence (ECL) Plus system (Amersham Biosciences, Piscataway, NJ, USA). All images were detected using a Syngene PXi 4 digital imager (Syngene, Frederick, MD, USA). Quantification of protein bands was performed using Fujifilm Multi Gauge software, version 3.0.
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2

Immunoblot Analysis of Purified Extracellular Vesicles

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For the immunoblot analyses of PC–NVs, equal protein amounts (10 µg) of purified PC–NVs and whole cells extracted using RIPA lysis buffer (Sigma-Aldrich) were separated by SDS-PAGE (12% gel) and transferred to polyvinylidene fluoride (PVDF) membranes. Each blot was blocked and incubated with antibodies to GM130 (BD Biosciences, San Jose, CA, USA; 1:1000), CD9 (Abcam, Cambridge, UK; 1:1000), CD81 (Novus Biologicals; 1:1000), or TSG101 (Novus Biologicals; 1:500).
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3

Exosome and Neuron Marker Detection

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Western blotting was used to identify the exosome marker (TSG101), nEV marker (CD171), and neuronal markers (TUJ1, NSE, and NeuN). For lysis, M-PER and Halt Protease and Phosphatase Inhibitor Cocktail (Thermo Fisher Scientific) were added to each tEV and nEV sample isolated from serum. Sample concentrations were measured using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific) according to the manufacturer’s instructions. Twenty micrograms of exosome lysates were loaded on Bolt 4–12% Bis-Tris Plus Gels (Invitrogen, Carlsbad, CA, USA) and transferred to polyvinylidene fluoride membranes (Invitrogen). The membranes were then blocked with TBS-T supplemented with 5% skim milk for 1.5 h at RT. Following blocking, the membranes were incubated with TSG101 (1:1000; Novus Bio, Littleton, CO, USA), CD171, β-actin (1:1000; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), TUJ1, NeuN, and NSE (1:1000; Abcam, Cambridge, UK) primary antibodies overnight at 4 °C. After the membranes were washed with TBS-T, they were incubated with horseradish peroxidase-conjugated secondary antibody (diluted 1:2000) for 1 h at RT. Following the reaction, the membranes were again washed with TBS-T. The bands were developed using EzWestLumi Plus (ATTO, Tokyo, Japan) and analyzed using ImageQuant LAS 4000 (GE Healthcare, Buckinghamshire, UK). Western blot was performed in triplicate.
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4

Extracellular Vesicle Protein Analysis

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ESC-NVs and whole cell lysates were separated by SDS-PAGE (10% resolving gel), and then transferred to a polyvinylidene difluoride membrane. Each blot was blocked, and probed with antibodies to GM130 (BD Biosciences, San Jose, CA, USA; 1:1000), CD63 (Novus Biologicals, Liggleton, CO, USA; 1:1000), CD81 (Novus Biologicals; 1:1000), or TSG101 (Novus Biologicals; 1:500).
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5

Extracellular Vesicle Isolation and Characterization

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Extracellular vesicles (EVs) were isolated from EDTA plasma using Ultracentrifugation. Hemolysis of blood was ruled out by visually inspecting plasma samples for any pink discoloration indicative of hemolysis or by measuring the absorbance of hemoglobin at 414nm. About 1ml of platelet-free plasma (PFP) was centrifuged at 20,000 × g for 15 minutes at 4°C to remove large-sized EVs. The supernatants were then centrifuged at 100,000 × g for 70 minutes at 4°C, washed with PBS, and spun again at 100,000 × g for 70 minutes to isolate small EVs. The abundance, size distribution and purity of small EVs was compared among different groups using the NanoSight LM10 system, TEM and Western blot analysis of EV markers using CD9 (Cat# 13174T/ 13174S, Cell Signaling Technology, MA, USA), CD81 (Cat# NB100-65805SS, Novus Biologicals, LLC), TSG101 (Cat# NBP2-77452SS, Novus Biologicals, LLC) and Alix (Cat# 2171T, Cell Signaling Technology, MA, USA) antibodies as mentioned in our previous publication9 (link).
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6

Adipocyte Exosome Proteomic Analysis

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Cell lysates of adipocytes were prepared in NP40 buffer and quantified using the bicinchoninic acid assay (Pierce). Exosomes were solubilized in NP40 buffer. Each well was loaded with 15 µg protein unless otherwise specified and probed overnight at 4°C with primary antibodies. The following antibodies were used: human adrenomedullin (Phoenix Pharmaceuticals), p44/42 MAPK (Cell Signaling Technology), phospho-p44/42 (Cell Signaling Technology), phospho-p38 (Cell Signaling Technology), p38 (Cell Signaling Technology), HSL (Cell Signaling Technology), phospho-HSL (Cell Signaling Technology), TNF-α (Cell Signaling Technology), β-actin as the loading control (Santa Cruz Biotechnology, Inc.), p16 (M-156) sc-1207 rabbit polyclonal (Santa Cruz Biotechnology, Inc.), CA 19-9 (Abcam), TSG101 (Novus Biologicals), Alix (Thermo scientific) and Anti-CD63 antibody (MEM-259) mouse monoclonal (Abcam).
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7

Characterizing Amniotic Fluid Extracellular Vesicles

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Unprocessed (raw) AF lysate was prepared by centrifuging unprocessed amniotic fluid at 1000g for 10 min to pellet cell debris and proteins. The pellet was lysed in 0.2mL RIPA buffer and centrifuged at 14,000g for 10 minutes. Protein was measured with a BCA assay for both raw AF lysate and AF-EV samples and the same amount of protein (80 ug/mL) was loaded for each sample. Capillary western was performed using 12-230 kDa prefilled plates (Bio-techne) with immunoassay and total protein detection. For total protein analysis a total protein detection module for chemiluminescence based assays (Bio-techne) was used. Separation time was 25 minutes, separation voltage was 375 V, primary antibody incubation time was 40 minutes, and secondary antibody incubation time was 30 minutes. Antibody signal was detected with HDR Chemiluminescence. Antibodies used were CD9 (Cell signaling technologies), TSG101 (Novus Biologicals), Annexin V (R&D Systems), and GM130 (Novus Biologicals).
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8

EV Protein Characterization by Western Blot

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EVs were lysed in a 10X RIPA buffer (Cell Signaling, Cat. No. 9806, Danvers, MA, USA), and a bicinchoninic acid (BCA) assay was used to determine protein concentrations. Protein samples (50 µg) were separated on 10% sodium dodecyl sulfate–polyacrylamide gels and transferred to PVDF membranes. The membranes were blocked with 5% skim milk for 2 h and incubated with primary CD81 (1:1000) (Novus, St. Charles, MO, USA, Cat. No. DB100-65805), TSG101 (1:1000) (Novus, Cat. No. NB200-112), ALIX (1:200) (Santa Cruz, Cat. No. sc-53540), and calnexin (1:1000) (Santa Cruz, sc-46669) antibodies overnight at 4 °C. After washing the unbound primary antibody with 1X TBS-0.1% Tween-20, the membranes were incubated with a secondary antibody (1:100) (Novus, Cat. No. NB7511) for 2 h at RT. An ECL Plus Western blotting Detection System (Cat. No. 32106, Thermo Fisher Scientific, Waltham, MA, USA) was used for visualization. Whole Western blots were added into Supplemental Material S1.
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