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6 protocols using rhoa 67b9

1

Analyzing Rho GTPase Signaling in H1299 Cells

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H1299 cells were plated in RPMI media containing 10% FBS at a density of 5.0 × 104/mL into each 100 × 20 mm tissue culture dish. The cells were incubated (37°C/5% CO2) overnight to allow them to adhere to the plates. The next day, the media were removed and replaced with experimental media containing PCAIs (0 – 5 μM) or 5 μM NSL-100 and then incubated for 24 h. The cells were washed with PBS, lysed with RIPA buffer and the amount of protein in lysates was determined using Pierce BCA Protein Assay kit (Thermo Scientific, Rockford, IL). Lysate volumes containing 50 μg of protein were boiled in Laemmli sample buffer and subjected to SDS-PAGE. Proteins were then transferred onto PVDF membrane and immunoblotted using antibodies against Rac1, Cdc42 and RhoA (67B9) that were purchased from Cell Signaling Technology (Danvers, MA). Bound antibodies were visualized using horseradish peroxidase-linked anti-rabbit IgG (Santa-Cruz Biotechnology, sc-2004) and ECL reagents (Bio-Rad) according to the manufacturer's recommendation.
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2

Analysis of O-GlcNAcylation and Signaling Proteins

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Cells were lysed for 15 min at ice bath using a lysis buffer (1% Triton X-100, 20 mM Tris pH 7.5, 1 mM MgCl2, 150 mM NaCl, 1 mM Na3VO4, 50 mM NaF, 1.5 mM EDTA, 10% glycerol, 20 mM β-glycerophosphate, 10 µg/ml aprotonin, 1 µM pepstatin A) containing 5 µM PUGNAc (an OGA inhibitor; Toronto Research Chemicals, Inc., North York, Canada). Protein samples (50 µg) were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Merck KGaA, Darmstadt, Germany). The membrane was blocked with 5% non-fat dried milk in TBST for 1 h at room temperature and incubated overnight at 4°C with primary antibodies. Antibodies specific to O-GlcNAcylation (RL2; 1:1,000; Affinity BioReagents, Golden, CO, USA) and OGT (F-12; 1:500; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) were used. RhoA (67B9; 1:1,000), MLC (3672; 1:1,000) and phosphorylated (p-)MLC (3671; 1:1,000) antibodies were obtained from Cell Signaling Technology, Inc. (Danvers, MA, USA). GAPDH antibody (sc-25778; 1:2,000) and horseradish peroxidase-linked goat anti-mouse (sc-2005; 1:2,000) and goat anti-rabbit (sc-2004; 1:2,000) IgG secondary antibodies were purchased from Santa Cruz Biotechnology, Inc. Development was carried out using an enhanced chemiluminescence western blotting detection reagent (GE Healthcare Life Sciences, Chalfont, UK).
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3

Western Blot Analysis of Cell Signaling

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Protein extraction and Western blot analysis were performed as previously described [52 (link)]. The following primary antibodies were used: FoxM1 (D12D5), Cleaved PARP (Asp214) (D64E10), RhoA (67B9), Rac1/2/3, Cdc42 (11A11) (Cell Signaling Technology, Inc., Danvers, MA, USA), T7-tag monoclonal antibody (Merck KGaA, Darmstadt, Germany), GAPDH (Trevigen, Inc., Gaithersburg, MD, USA). Donkey anti-rabbit IgG-HRP (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA) and anti-mouse IgG-HRP (Promega Corp., Madison, WI, USA) were used as a secondary antibody.
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4

Cell Culture and Antibody Use

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COS7, HeLa and MDA-MB-231 cells were grown in DMEM supplemented with 10% FCS, 1% pyruvate. PC3 cells were grown in RPMI supplemented with 10% FCS. All media contained 100 µg/ml streptomycin and 100 U/ml penicillin. The following antibodies were used: myc tag (A-14, sc-789, or 9E10, sc-40; Santa Cruz Biotechnology), GFP (FL) (sc-8334; Santa Cruz Biotechnology), Cullin3 (611848; BD), ROCK1 (611136; BD), ROCK2 (610623; BD), HA tag (3F10; Sigma–Aldrich), pMLC2 (Thr18/Ser19) (#3674, Cell Signaling), MLC2 (#3672, Cell Signaling), RhoA 67B9 (#2117, Cell Signaling), GAPDH (MAB374, Merck Millipore). Secondary horseradish peroxidase (HRP)-labelled antibodies were from GE Healthcare (anti-mouse, anti-rat and anti-rabbit). Complete protease inhibitor cocktail and PhosphoStop were from Roche. Active recombinant human GST-ROCK1 (17–535, # R10–11G) was from SignalChem. MLN4924 was from BostonBiochem (R&D Systems). H1152 Rho kinase inhibitor was from Calbiochem.
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5

Breast Cancer Cell Line Culture and Analysis

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Cell lines were obtained from the University of Colorado Cancer Center Tissue Culture Shared Resource. BT-20 and MDA-MB-468 cells were cultured in DMEM/F-12 medium (Corning #10-092-CV) containing 10% fetal bovine serum. SUM-159 cells were cultured in HAM’s F-12 medium (Corning #10-080-CV) containing 5% fetal bovine serum, 1 μg/mL hydrocortisone and 5 μg/mL insulin. All cell lines were authenticated by short tandem repeat DNA profiling performed by the UCCC DNA Sequencing and Analysis Core. Western blot analysis was conducted according to our previous protocol [10 ]. Antibodies used in the study were: PRL-3 (Cat. # ab82568, Abcam), p-Src (Y416) (Cat. #2101, Cell Signaling), Src (36D10) (Cat. #2109, Cell Signaling), p-ERK 1/2 (T202/Y204) (Cat. #4377, Cell Signaling), ERK 1/2 (44/42) (Cat. #4695, Cell signaling), RhoA (67B9) (Cat. #2117, Cell Signaling), Rac1/2/3 (Cat. #2465, Cell Signaling), MMP-10 (Cat. #SC-9941, Santa Cruz), β-actin (Cat. # A5441, Sigma-Aldrich).
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6

MYO9A Protein Interaction Analysis

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Proteins were resolved by SDS-PAGE and immunoblotted as previously described31 (link),32 (link), with anti-MYO9A (clone 4C11), actin (A2066, Sigma), calmodulin (EP799Y, Abcam), GAPDH (6C5, Millipore), RhoA (67B9, Cell signaling) primary antibodies. Co-immunoprecipitation was performed as described34 (link),35 (link), with anti-MYO9A rabbit polyclonal antibody (A305–702A-M, Bethyl), followed by immunoblotting.
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