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6 protocols using cd11c bv650

1

Comprehensive Tumor Immune Profiling

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Tumor cells isolated from mice were thawed and stained with LIVE/DEAD Fixable Violet Dead Staining Kit (ThermoFisher). Subsequently, the cells were divided and stained with cocktails of fluorochrome-conjugated monoclonal antibodies: CD3 PE-CF594, CD19 PE-CF594, CD49b PE-CF594 (all from BD Biosciences), CD45 BV605, CD11b PerCP-Cy5.5, CD11c BV650, F4/80 AlexaFluor 700, Ly6C PE, Ly6G APC-Cy7, MHC II FITC, CD80 PE-Cy7 (all from Biolegend) for myeloid cell identification and CD45 BV605, CD3 BV650, CD4 FITC, CD8 APC-Fire, CD25 PE, CD44 PE-Cy7, CD62L PerCP-Cy5.5 (all from BioLegend) for lymphocytes identification. Then, the cells were fixed using FoxP3 Fixation Permeabilization Staining Kit (eBioscience). Tumor cells stained with myeloid or lymphocyte cocktail were additionally incubated with anti-CD206 APC (BioLegend) or FoxP3 APC (eBioscience) antibodies, respectively. The analysis was performed using FACSFortessa flow cytometer with Diva software (Becton Dickinson).
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2

Tumor-Targeted IL-10 Silencing in Mice

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Eight to ten-week old female C57BL/6 mice were subcutaneously inoculated in the right flank with MC38/0 cells (1.1 × 106/0.2 ml/mouse). On the 14th, 15th and 17th day of the experiment, mice were injected i.t. with LVs encoding shRNA against IL-10 (shIL10–3, 2x106TU/50 μl/mouse) or reference LVs encoding scrambled shRNA against human GAPDH (shN). Two days after the third injection, the mice were sacrificed and their tumor nodules were dissected and homogenized. Efficacy of transduction in tumors was measured by flow cytometry as the fluorescence intensity of EGFP among cells isolated from tumors. Concentration of IL-10 was estimated by ELISA in supernatants collected from 24 h culture of 5 mg tumor tissue/ml. Myeloid and lymphocyte populations in tumors were analyzed using LSR Fortessa with Diva software (Becton Dickinson) after staining with fluorochrome-conjugated antibodies: CD45 V500, CD3 PE-CF594, CD19 PE-CF594, CD49b PE-CF594 (all from BD Biosciences), CD11b PerCP-Cy5.5, CD11c BV650, F4/80 AlexaFluor 700, Ly6C BV510, Ly6G BV605, MHC II APC-Cy7, for myeloid cell identification (all from Biolegend) and CD45 BV605, CD3 BV650, CD4 FITC, CD8 APC-Fire, (all from BioLegend) for lymphocyte identification.
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3

Immature DC Maturation Assay

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Immature DCs were generated as described above (“Generation of Mo-DCs” section). DCs were cultured alone or with untreated or BTZ pretreated-AMO1 (5nM) for 24h. DCs alone were cultured i) without maturation stimuli; ii) with 50 ng/ml of TNFalpha (Millipore Sigma); or iii) with 5nM of BTZ. After 24h, cells were harvested and analyzed by flow cytometry using the following Abs: anti- CD83-APC (#551073), CD86-FITC (#555657) and 7-AAD from BD Biosciences and CD11c-BV650 (#563404, Biolegend). Dead cells were excluded by 7-AAD positivity, and CD83 and CD86 expression was evaluated on CD11c+ cells.
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4

BMDC Activation Assay with MCA205 Cells

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BMDC were stained with 1 µM CFSE for 10 min at 37 °C in PBS, washed and seeded at 5 × 104 cells/well in 96 well suspension plates. Next, BMDC were co-cultured with MCA205 cells in ratios 1:1; 1:5; 1:10 (BMDC:MCA205) or stimulated with 250 ng/ml of LPS (#L-2630, Sigma Aldrich). After O/N co-culture, cells were collected, washed in ice-cold FACS buffer and stained for surface markers: CD11c-BV650 (#117339, BioLegend, 1:200), MHCII-APC/eFluor700 (#47-5321-82, eBioscience, 1:100), CD86-PE/Cy7 (#105116, BioLegend, 1:200), CD80-PE/Cy5 (#104712, BioLegend, 1:200), CD40-APC (#558695, BD Pharmingen, 1:200) and CD274-PE (#12-5982-82, eBioscience, 1:200). The acquisition was performed with a LSRII flow cytometer using BD FACSDIVA 8.0 software and the analysis was performed using FlowJo 10.2 software.
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5

Multiparameter Flow Cytometry Protocol

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Single-cell suspensions were stained with fluorescently conjugated antibodies in a 1:100 dilution unless otherwise noted. For live/dead discrimination, cells were stained with either LIVE/DEAD Blue Reactive Dye (Invitrogen) (20 minutes, on ice, before primary) or Alexa Fluor NHS Ester (ThermoFisher) (with primary stain), and 4μg/mL anti-CD16/32 (2.4G2; Bioxcell) to block Fc receptors. The following anti-mouse antibodies were used, with clone and source company listed: CD45 PerCP-Cyanine5.5 (30-F11, BioLegend), CD45 BV510 (30-F11, BioLegend), CX3CR1 BV605 (SA011F11, BioLegend), F4/80 BV711 (BM8, BioLegend), Ly6G PerCP-Cyanine5.5 (1A8, BioLegend), Ly6C PE/Cyanine7 (HK1.4, BioLegend), CD11b BUV395 (M1/70, BD Horizon), CD11c BV650 (N418, BioLegend), Ki67 PE/Dazzle (16A8, BioLegend). Intracellular Ki67 was stained using the eBioscience Transcription Factor Staining Kit, following the included protocol. The BD FACS ARIA II was used for cell sorting, and the Bio-Rad ZE5 Yeti was used for flow cytometry analysis. Data analysis was performed using FlowJo v10 (FlowJo LLC).
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6

Multiparametric Immune Cell Analysis

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Splenocytes, lymph node cells, and tumor cells isolated from mice were incubated with anti-mouse CD16/CD32 mAb (15 min, 4°C, eBioscience). Splenocytes were stained with the LIVE/DEAD FixableViolet Dead Staining Kit (Thermo Fisher Scientific, Inc.). Subsequently, the cells were divided and stained with cocktails of fluorochrome-conjugated monoclonal antibodies: anti-CD3 PE-CF594, CD19 PE-CF594, and CD49b PE-CF594 (all from BD Biosciences); CD45 V500, CD11b PerCP-Cy5.5, CD11c BV650, F4/80 Alexa Fluor 700, CD86 PE-Cy7, and MHC II APC-Cy7 (all from BioLegend) for myeloid cell identification; and CD45 V500, CD4 PerCp-Cy5.5, CD8 PE-Cy7, CD49b PE-CF594, CD44 PE, and CD62L BV605 for lymphocyte identification. Cells were incubated with antibodies for 45 min at 4°C. Additionally, the percentage of Treg cells was determined among the splenocytes. For this purpose, the cells were fixed using the Foxp3/Transcription Factor Staining Buffer Set (eBioscience) and then incubated with anti-FoxP3 APC antibodies (eBioscience) [28 (link)]. To identify dead cells in lymph node cells and tumor cells, 50 μl of DAPI dye solution (1 μg/ml, Molecular Probes) was added to the samples immediately before analysis. The analysis was performed using a BD LSRFortessa Cell Analyzer (Becton Dickinson, Cat. No. 649225B5) with the BD FACSDiva software 8.0 and the NovoExpress software 1.3.0 (ACEA Biosciences, Inc.).
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