The largest database of trusted experimental protocols

Taq green master mix

Manufactured by Thermo Fisher Scientific
Sourced in United States

Taq Green Master Mix is a premixed solution containing Taq DNA polymerase, reaction buffer, and dNTPs. It is designed for use in standard PCR amplification.

Automatically generated - may contain errors

3 protocols using taq green master mix

1

Quantitative RT-PCR Analysis of MMPs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA, USA). An RNA denaturation mix consisting of isolated RNA, oligo dT primers, and nuclease-free water was denatured. Reverse transcription polymerase chain reaction (RT-PCR) was performed using oligonucleotide primers specific to MMP-1 (forward primer, TGC AAC TCT GAC GTT GAT CCC AGA; reverse primer, ACT GCA CAT GTG TTC TTG AGC TGC; 122 bp), to MMP-3 (forward primer, CTG GGC CAG GGA TTA ATG GAG; reverse primer, CAA TTT CAT GAG CAG CAA CGA GA; 102 bp) or to MMP-9 (forward primer, ATT TCT GCC AGG ACC GCT TCT ACT; reverse primer, CAG TTT GTA TCC GGC AAA CTG GCT; 195 bp). Two reactions were run in parallel with a second reaction containing only Platinum Taq polymerase to assure that the source of the RT-PCR product was mRNA. Complementary DNA was synthesized by adding prime RT premix, Taq Green Master Mix (Thermo Scientific, Carlsbad, CA, USA), and 10 pM of each forward and reverse primer. The amplification reaction was carried out for 30 cycles on a DNA Engine Cycler (Bio-Rad, Hercules, CA, USA). The amplified PCR products were analyzed using Multi Gauge software (Fujifilm, Tokyo, Japan) after electrophoresis. The level of b-actin was used as an internal standard.
+ Open protocol
+ Expand
2

Quantification of mCx45 Transcripts in MDCK Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MDCK clones expressing mCx45 WT and 6E were seeded and cultured to confluence. Cells were rinsed 2x with 1x PBS and lysed for RNA content using the GeneJet RNA Isolation kit (Thermo) per manufacturer protocol. Equivalent masses of RNA were reverse transcribed using the MuMV-RT kit (NEB) per manufacturer protocol with OligoDT priming. Equal volumes of each RT reaction were used as template for standard PCR reactions with primers to mCx45-WT/6E (5- ACAGTAAAAGGAGGGAACTTGAT-3′ and 5- TGGCTTTGTTTTGCTTGTAGG-3′) and GAPDH (5- GTAGTGAAGCAGGCATCGGA-3′ and 5- GTCGAAGGTGGAAGAGTGGG-3′) using Taq Green Master Mix (Thermo). Cycling was carried out as follows: Initial denaturation 95°C for 2 min, followed by 30 cycles of 95°C denaturation for 30 sec, 54.5°C annealing for 30 sec, and 72°C extension for 30 sec, followed by final extension of 5 min at 72°C. Equal samples volumes were analyzed by 2% Agarose/TAE electrophoresis spiked with ethidium bromide. No reverse transcriptase reactions were used to subtract genomic background. Quantification was done using NIH ImageJ software, normalizing samples to GAPDH loading control. Quantification was done using 3 independent replicates.
+ Open protocol
+ Expand
3

Quantifying mRNA Expression via RT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA, USA). An RNA denaturation mix consisting of isolated RNA, oligo dT primers, and nuclease-free water was denatured. Reverse transcription polymerase chain reaction (RT-PCR) was performed using oligonucleotide primers specific to eNOS (forward primer, 5′-CTG GCT TTC CCT TCC AGT TC-3′, 225 bp, reverse primer 5′-CCT TCC AGA TTA AGG CGG AC-3′, 225 bp) or MMP-2 (forward primer, 5′-CTC GTG CCT TCCT AAG TCT GG-3′, 251 bp, reverse primer, 5′-GGC GTT CCC ATA CTT CAC AC-3′, 251 bp). Two reactions were run in parallel with a second reaction containing only Platinum Taq polymerase to assure that the source of the RT-PCR product was mRNA. cDNA was synthesized by adding prime RT premix, Taq Green Master Mix (Thermo Scientific, Carlsbad, CA, USA), and 10 pM of each forward and reverse primer. The amplification reaction was carried out for 30 cycles on a DNA Engine Cycler (Bio-Rad, Hercules, CA, USA). The amplified PCR products were analyzed using Multi-gauge software (Fujifilm, Tokyo, Japan) after electrophoresis. The level of b-actin was used as an internal standard.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!