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13 protocols using quantity one image analyzer software

1

Western Blot Analysis of Cardiovascular Markers

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Heart and aorta were removed 8 weeks after electroacupuncture stimulation. The tissues were lysed in RIPA buffer containing phosphatase and protease inhibitors and the protein content was quantified with a Bio-Rad kit (Bio-Rad, Hercules, CA, USA) following the conditions suggested by the manufacturer. Equal amount of total protein was subjected to SDS-PAGE and blotted. The PVDF Membranes (Millipore, Billerica, MA, USA) were incubated with specific primary antibodies overnight at 4°C followed by HRP-labeled secondary antibodies for 1 h at room temperature. The primary antibodies used included AT1R antibody (1:300), ETAR antibody (1:300), eNOS antibody (1:1000) and iNOS anibody (1:1000) (Abcam, Cambridge, MA, USA). The targeted proteins were detected by using enhanced chemiluminescence system (Pierce,Rockford,IL, USA). Densitometric analyses of Western blots were performed using the Quantity One image analyzer software (Bio-Rad, Hercules, CA, USA). The analysis was performed using volume rectangular tool. For background subtraction the same area was selected above and below the bands using the global method for background subtraction [19 (link)].
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2

Quantitative Protein and Cell Analysis

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Bands from immunoblots or agarose gels were quantified by using Quantity One image-analyzer software (Bio-Rad Laboratories). All culture assays were normalized on the basis of cell viability by using the CellTiter-Glo assay from Promega. Each experiment was performed at least in triplicate and data were expressed as mean ± SEM. Comparisons between two or four samples were performed using Student’s t-test or one way analysis of variance (47 (link)) with post hoc Tukey’s test (Prism software, GraphPad Inc, San Diego, CA).
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3

Phosphorylation and Expression Analysis of Cardiac Proteins

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To determine the levels of phosphorylation of CaMK II-δ and the expression of Nav 1.5, 7 groups of heart tissue were properly used and analyzed after perfusion with either K-H solution in absence (control) or presence of Bay K 8644 (200 nM), ATX-II(3 nM), ATX-II (3 nM) + Bay K 8644 (200 nM), Bay K 8644 (200 nM) + TTX (1 μM), ATX-II (3 nM) + TTX (1 μM), ATX-II (3 nM) + Bay K 8644 (200 nM) + TTX (1 μM). Total protein of left ventricular myocardium was extracted, immunoprecipitation and Western blotting analysis were performed using a standard method. In brief, tissue lysates were first incubated with magnetic beads covalently conjugated with anti-phospho-Akt substrate (RXXS*/T*) rabbit mAb (Cell Signaling Technology, #8050) and anti-phospho-PKA substrate antibody (RRXS*/T*) Ab (Cell Signaling Technology, #9621) at 4 °C overnight, respectively. Sample buffer mixed with the washed beads was heated at 95 °C for 5 min and subjected to SDS-PAGE. Then the proteins were blotted with rabbit anti- CaMK II-δ Ab (Abcam, ab90445), and anti-Nav 1.5 Ab (Abcam, ab56240), respectively. Blotted antibodies were visualized by HRP-conjugated mouse anti-rabbit IgG mAb (Cell Signaling Technology, #5127) and ECL detection system (Millipore). Densitometric analyses of blots were performed using the Quantity One image analyzer software (Bio-Rad, Richmond CA, USA).
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4

Myocardial Protein Expression Analysis

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A piece of about 200 mg of myocardium tissue was harvested from each animal (n = 4), quickly frozen in liquid nitrogen, and stored at −80 °C for a maximum of one week before use. The whole protein of the tissues was extracted with a protein extraction kit (Applygen Technologies, Beijing, China), according to manufacturer’s instruction. The whole protein was separated on 12% SDS-PAGE and transferred to polyvinylidene difluoride membrane. The membrane was incubated overnight at 4 °C with antibodies, respectively, against GAPDH (1:5000), ALDOA (1:5000), ENOα (1:4000), ENOβ (1:4000), ECH1 (1:1000), HSP70 (1:1000), HIF1 (1:500), CPT1A (1:2000), PFK2 (1:4000), PDH (1:4000), SODM (1:8000), HSPB1 (1:800) and RhoGDI1 (1:4000). The membranes were then incubated with secondary antibody for one hour at room temperature, and immunoreactive bands were revealed using an enhanced chemiluminescence system. The protein signal in the X-film was quantified by scanning densitometry and further evaluated by a bio-image analysis system (Quantity One image analyzer software, Bio-Rad, Richmond, CA, USA).
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5

Protein Extraction and Western Blot Analysis

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Using a protein extraction kit (Applygen Technologies), total protein was extracted and the concentration of protein was determined by a BCA protein assay kit (Applygen Technologies). Western blot analysis was performed routinely (10 (link)), with primary antibodies against NDUFA10 (Santa Cruz, Santa Cruz, Calif), adenosine triphosphate synthase δ-subunit (ATP 5D) (Abcam), Sirt1, Sirt3, SDHA, B-cell lymphoma 2 (Bcl-2), Bcl-2-associated X protein (Bax), cleaved caspase-3, and glyceraldehyde-3-phosphatedehydrogenase (GAPDH) (Cell Signaling Technology, Beverly, Mass). Enhanced chemiluminescence detection kit (Applygen Technologies, Beijing, China) was used to detect the bands. Band intensity was expressed as mean area density using Quantity One image analyzer software (Bio-Rad, Richmond, Calif) for quantification.
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6

Protein Expression Analysis by Western Blot

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Total protein was extracted using a protein extraction kit (Applygen Technologies, Beijing, China). The protein concentration was determined with a BCA protein assay kit (Applygen Technologies, Beijing, China). Western blot analysis was performed routinely, with primary antibodies against β-actin, Acc, Fas (Cell Signaling Technology, Beverly, MA, United States), Scd1 and Srebp1 (Thermo Scientific, Fremont, CA, United States). 100 μg protein was loaded in each well. The bands were detected using an ECL detection kit (Applygen Technologies, Beijing, China). For quantification, band intensity was assessed by densitometry and expressed as the mean area density using Quantity One image analyzer software (Bio-Rad, Richmond, CA, United States).
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7

Protein Expression Profiling in Myocardial Tissue

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Western blotting assay was performed to verify the differentially expressed proteins obtained from quantitative proteomics analysis. Myocardial tissues were taken from left ventricle, and total proteins were extracted using a protein extraction kit (Applygen Technologies, Beijing, China) and mixed with 5× electrophoresis sample buffer. After electrophoresis, the separated proteins were transferred to polyvinylidene difluoride membrane. After being blocked with 5% non-fat dry milk, the membrane with target proteins was incubated overnight at 4°C with antibodies against Eno-1, Mcee, Bdh1, Ces1c, Cbr4, ND2, Cox6a, Cox17, ATP 5j, Atl3, heat shock protein (HSP)70, HSP40, extracellular signal-regulated kinase (ERK) 1/2, P-ERK1/2, and CX 43 (Abcam, Cambridge, MA, United States). Blotted antibodies were visualized by HRP-conjugated second antibody (Cell Signaling Technology) and ECL detection system (Applygen Technologies, Beijing, China). Densitometric analyses of blots were performed using the Quantity One image analyzer software (Bio-Rad, Richmond CA, United States). The result of each band was expressed as relative optical density compared with internal controls of β-actin (Zheng et al., 2019 (link)).
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8

Western Blot Analysis of Liver and Aorta Proteins

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Liver or aorta tissues were lysed in sample buffer containing 62 mM Tris–HCl, pH 6.8, 0.1% SDS, 0.1 mM sodium orthovanadate, and 50 mM sodium fluoride. The protein content was determined by the BCA protein assay (Applygen Technologies Inc., Beijing, China). Equal amount of proteins was loaded and separated by SDS-PAGE. After electrophoresis, the proteins were transferred on membranes, after being blocked with 3% non-fat dry milk, the membrane with target proteins was recognized with primary antibodies against CD36, SR-A, SR-BI, PPARα, ABCA1, ABCG1, ABCG5, ABCG8, and GAPDH (Abcam, Cambridge, MA, United States). The bands were detected using an ECL detection kit (Applygen Technologies, Beijing, China). For quantification, band intensity was assessed by densitometry and expressed as mean area density using Quantity One image analyzer software (Bio-Rad, Richmond, CA, United States).
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9

Protein Expression Analysis in Rat Tissues

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The rats were sacrificed, and the ileum, colon, and brain tissues were collected and frozen to −80 C. The total protein was extracted using a protein extraction kit (Applygen Technologies, Beijing, China) and then was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride (PVDF) membrane. After blocking with 5% bovine serum albumin, the membrane was incubated overnight at 4 °C with antibodies against DβH (1:1000, Thermo Scientific, Rockford, Illinois, United States), c-fos (1:1000, Abcam, Cambridge, UK), MLCK (1:1000, ImmunoWay Biotechnology Company, Plano, United States), MLC (1:1000, Cell Signaling Technology, Massachusetts,United States), p-MLC (1:1000, Cell Signaling Technology, Massachusetts,United States), GAPDH (1:2000, Cell Signaling Technology, Massachusetts,United States), and α1-ARs (1:1000, Proteintech, Rosemont, United States). After washing, the membrane was incubated with a secondary antibody for 1 h at room temperature and then the immunoreactive bands were revealed using an enhanced chemiluminescence system and analyzed using the Quantity One image analyzer software (Bio-Rad, Texas, United States).
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10

Investigating HIF-1α and EMT Markers in HCT-116 Cells

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Before extracting protein, HCT-116 cells were treated with Yiai Fang for 24 h. The protein was extracted from the cultured cells and then homogenized with a protein extraction kit (Applygen Technologies, Beijing, China) on ice, according to manufacturer’s instruction. The whole protein was then separated on 12 % SDS-PAGE and transferred to NC membrane. The membrane was incubated overnight at 4 °C with antibodies, respectively, against HIF-1α (1:1000, Novus Biologicals, USA), β-actin (1:5000, Cell Signaling Technology, USA), E-cd (1:5000, Cell Signaling Technology, USA), Claudin-4 (1:2000, Cell Signaling Technology, USA), and VIM (1:2000, Cell Signaling Technology, USA). Then,the membranes were incubated with secondary antibody for 24 h at 4 °C, and immunoreactive bands were revealed using an enhanced chemiluminescence system. The protein signal in the X-film was quantified by scanning densitometry and further evaluated by a bio-image analysis system (Quantity One image analyzer software, Bio-Rad, Richmond, CA, USA).
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