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16 protocols using lamin a c

1

Protein Extraction and Western Blot Analysis

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The cells after the corresponding treatments were harvested and lysed with lysis buffer (20 mM Tris (pH7.5), 150 mM NaCl, 1 % Triton X-100, sodium pyrophosphate, β-glycerophosphate, EDTA, Na3VO4, leupeptin, and 1 % protease inhibitor cocktail (Roche)). 10 % or 12 % SDS-PAGE was used to separate the collected cell lysates according to the methods described previously [12 (link), 48 (link)].
Blots were probed with the specific antibodies against PCNA (Proteintech, Chicago, USA), β-actin (Proteintech, Chicago, USA), Lamin A/C (Proteintech, Chicago, USA), Tubulin (Proteintech, Chicago, USA), atp A1 (Cell Signaling Technology, USA). Secondary antibodies conjugated with Horseradish peroxidase (ProteinTech Group) and enhanced chemiluminescence (ECL kit, Beyotime, China) were employed to test the expression of proteins.
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2

Cell Lysis and Western Blot Analysis

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For preparing cell lysates for western blotting, cells were lysed in ice-cold cell lysis buffer and centrifuged to remove cell debris. Nuclear and cytoplasmic fractions were extracted from the cell pellets as previously described [61 (link)]. After electrophoresis, proteins were transferred to a PVDF membrane. After blocking, membranes were incubated with the following primary antibodies: GAPDH (ProteinTech #60004-1-Ig), HSD17B6 (ProteinTech #11855-1-AP), AKT (CST #C6717), p-AKT (Ser473) (CST #4060), PTEN (ProteinTech #22034-1-AP), MMP2 (ProteinTech #10373-2-AP), MMP9 (ProteinTech #10375-2-AP), E-cadherin (ProteinTech #20874-1-AP), N-cadherin (ProteinTech #66219-1-Ig), Vimentin (ProteinTech #10366-1-AP), snail (CST #3895), survivin (CST #2808), GSK3β (ProteinTech #22104-1-AP), p-GSK3β (CST #9322), β-catenin (CST #8480), cyclin D1 (ProteinTech #60186-1-Ig), cyclin E1 (ProteinTech #11554-1-AP), PCNA (ProteinTech #10205-2-AP), and Lamin A/C (ProteinTech #10298-1-AP) overnight at 4 ˚C. Then, the membranes were incubated with secondary antibodies: HRP-conjugated anti‑rabbit IgG (ProteinTech #SA00001‑2) or anti‑mouse IgG (ProteinTech #SA00001‑1) for 1 h at room temperature. All the experiments were performed in triplicate.
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3

Western Blot Analysis of Cellular Markers

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Cell lysis was carried out with RIPA lysis buffer (50 mM Tris pH 7.5, 150 mM NaCl, 1% NP-40, 0.5% Na-deoxycholate, 0.1% SDS) supplemented with FPIC (Fast Protease Inhibitors cocktail; Sigma-Aldrich; Cat#: S8830-20TAB). The lysates were reduced in NuPAGE LDS Sample Buffer (Thermo Fisher; Cat#: NP0007) supplemented with NuPAGE Sample Reducing Agent (Thermo Fisher; Cat#: NP0009), separated by polyacrylamide gel in NuPAGE MOPS SDS Running Buffer (Thermo Fisher; Cat#: NP0001) and transferred into nitrocellulose membrane (Amersham; Cat#: 10600007). Membranes were blocked in 5% milk powder in PBST Buffer (1× PBS, 0.2% Tween 20) and incubated overnight at 4°C with the primary antibodies against SETDB1 (Abcam; Cat#: ab107225), H3 (Santa Cruz Biotechnology; Cat#: sc-8654), H3K9me3 (Abcam; Cat#: ab8898), H3K27me3 (Diagenode; Cat#: C15410069), Lamin A/C (Proteintech; Cat#: 10298-1-AP), Lamin B1 (Abcam; Cat#: ab16048), E-cadherin (BD Transduction Laboratory; Cat#: 610181), Paxillin (Millipore; Cat#: 05-417), β-actin (Sigma-Aldrich; Cat#: A5441). Membranes were incubated with the appropriate LI-COR IRDye secondary antibody (LI-COR Biosciences GmbH) and revealed by Odyssey Fc imaging system (LI-COR Biosciences GmbH). The images obtained from the slot blot assay were analyzed with the Image Studio Lite 5.2.5 software.
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4

Cell Fractionation and Co-Immunoprecipitation

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Cell fractionation assays were performed using Nuclear and Cytoplasmic Extraction Reagents (Pioneer Biotechnology, Xi’an, China) following the manufacturer’s instructions. The co-immunoprecipitation (Co-IP) assay were conducted by a Dynabeads protein G immunoprecipitation kit (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. Equal amounts of protein were separated on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes. Subsequently, the membranes were blocked in 5% nonfat milk and then incubated overnight at 4 °C with the primary antibodies against FMNL2, MCM7, PCNA and p27 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); Ki67 and ERα (Abcam, Cambridge, MA, USA); Ubiquitin and PR (Cell Signaling Technology, USA.); HER2, p21, CyclinD1, Lamin A/C, GAPDH and β-actin (Proteintech, Wuhan, China). After incubation with proper HRP-conjugated secondary antibody, the protein bands were visualized by an enhanced chemiluminescence system (Millipore, Bedford, MA, USA).
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5

Cepharanthine Regulates Wnt/β-Catenin Signaling

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CEP (Cepharanthine, purity > 98%, MB2077-S) was purchased from Meilunbio (Dalian, China). CHX (Cycloheximide, S7418), MG132 (S2619) and ActD (Actinomycin D, S8964) were obtained from Selleck (Houston, TX, USA). Promega (Madison, WI, USA) provided the product of dual-luciferase reporter assay kits (E1960). Invitrogen (Camarillo, CA, USA) supplied the product of Lipofectamine® 3000 reagent (L3000015).
The antibodies used in the present investigation are as follows: β-catenin (Proteintech, 51067-2-AP), Axin2 (Abclonal, A17022), CyclinD1 (Proteintech, 60186-1-Ig), β-actin (Sigma-Aldrich, A1978), Lamin A/C (Proteintech, 10298-1-AP), Phospho-β-catenin (Cell Signaling Technology, 9561), Active-β-catenin (Cell Signaling Technology, 4270).
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6

Aβ Aggregation Inhibition Assay

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T0901317, bexarotene, ABC294640, SLM6031434, and FTY720 were purchased from Cayman Chemical (Ann Arbor, MI). Trichostatin A (#HY-15144) was purchased from MedChemExpress (Monmouth Junction, NJ). Synthetic Aβ1-42 peptide (Peptide Institute, Osaka, Japan) was solubilized in hexafluoro-2-propanol at a concentration of 1 mg/ml to prevent self-aggregation. For immunoblotting and immunostaining, antibodies against human Aβ N terminal (clone 82E1; Immuno-Biological Laboratories, Gunma, Japan), ATP binding cassette transporter A1 (ABCA1) (clone HJ1; Abnova, Taipei, Taiwan), ApoE (#AB947; Merck Millipore, Burlington, MA), α-tubulin (clone 10G10; Fujifilm Wako, Osaka, Japan), β-actin (#5125; Cell Signaling Technology, Danvers, MA), GAPDH (#2118; Cell Signaling Technology), glial fibrillary acidic protein (GFAP) (#GTX108711; GeneTex, Irvine, CA), Lamin A/C (#10298-1-AP; Proteintech, Rosemont, IL), LXRα/β (#sc-377260; Santa Cruz Biotechnology, Dallas, TX), nuclear factor-κB (NF-κB) p65 (#8242; Cell Signaling Technology), RXRα (#sc-515929; Santa Cruz Biotechnology), SphK2 (#17096-1-AP; Proteintech), and 6His (#66005-1-Ig; Proteintech) were purchased from the indicated vendors.
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7

Western Blot Analysis of Immune Markers

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Mouse colon tissues or RAW264.7 cells were added with an appropriate amount of RIPA buffer, followed by protease inhibitors and phosphatase inhibitors, and lysed on ice for 40 min. Then, nuclear and cytoplasmic proteins from RAW264.7 cells were separated using the Nuclear and Cytoplasmic Extraction Kit. After protein quantification, the same amount of protein was added to each gel well, and separated by 10% resolving gel and 5% stacking gel and transferred onto PVDF membranes. After blocking with 5% BSA for 2–3 h, incubated PVDF membranes with NOS2, Arg-1 (rabbit polyclonal, 1:500), Lamin A/C (rabbit polyclonal, 1:1,000) (all purchased from Proteintech, Chicago, IL, United States); and p-STAT1, STAT1, p-STAT6, and STAT6 (rabbit polyclonal, 1:500) (all from Affinity, Shanghai, China); ß-actin (rabbit polyclonal, 1:1,000) (from Santa Cruz, Dallas, TX, United States) at 4°C overnight. Next, the membranes were disposed with HRP-labeled Goat IgG antibody (anti-rabbit, 1:10,000) (from Zhong Shan, Beijing, China) for 1 h. Then the membranes were washed with 1×PBST, and incubated in a photoluminescence solution for imaging. The bands of the protein were analyzed by Image J software (version: v1.8.0).
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8

Protein Expression Analysis in Cells

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Total proteins were prepared using prechilled RIPA buffer (Thermo Fisher, USA) with proteinase inhibitor cocktail (Thermo Fisher, USA). For separating nuclear and cytoplasmic proteins, cells were harvested and lysed in nuclear and cytoplasmic extraction reagents (Keygentec, China) according to the manufacturer’s protocols. The proteins were subjected to western blot using antibodies against E2F1 (1:1000, Cell Signaling, USA), N-cadherin (1:1000, Proteintech, USA), MMP2 (1:1000, Proteintech, USA), MMP9 (1:1000, Proteintech, USA), Snail1 (1:1000, ABclonal, China), GAPDH (1:5000, Proteintech, USA), Lamin A/C (1:1000, Proteintech, USA). Relative expression levels were normalized to endogenous loading control using ImageJ software (National Institutes of Health, USA).
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9

Western Blot Analysis of Melanoma Cells

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Melanoma cells were seeded at a density of 6 × 105 cells ml−1 in 12-well plates and lysed the next day with LDS buffer 1× (Life Technologies). Lysates were denatured at 95 °C for 5 min and sonicated. SDS–PAGE and western blotting were performed using standard procedures. Membranes were visualized and bands quantified using an Odyssey Fc (LI-COR). Loading controls were run on the same blot. Individual 680 and 800 channels were co-visualized in greyscale on the same image. Primary antibodies were: LAP1 (1:1,000; #21459-1-AP), Lamin A/C (1:1,000, #10298-1-AP), Lamin B1 (1:1,000, #12987-1-AP), Lamin B2 (1:1,000, #10895-1-AP) from Proteintech; pThr18/Ser19-MLC2 (1:750, #3674), MLC2 (1:750, #3672) from Cell Signaling Technology; GAPDH (1:10,000, #MAB374) from Merck. Secondary antibodies were: IRDye 680RD goat anti-rabbit IgG (1:10,000, #925-68071) and IRDye 800RD goat anti-mouse IgG (1:10,000, #925-32210) from LI-COR.
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10

Western Blot Analysis of Protein Levels

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Equal quantities of the proteins were separated by SDS-PAGE gels, transferred to nitrocellulose membranes, incubated with 5% skimmed milk, and then incubated with the primary antibodies at 4 °C overnight. The primary antibodies were diluted as follows: NRF2 (1:1000, GeneTex, Irvine, CA, USA), β-tubulin (1:2000, ZenBio, Chengdu, Sichuan, China), and Lamin A/C (1:2000, Proteintech, Chicago, IL, USA). The membranes were incubated with the HRP-labeled secondary antibody in blocking buffer at room temperature. Blots were developed using an enhanced chemiluminescence reagent (Thermo Fisher Scientific, Waltham, MA, USA). The relative protein density was quantified using Image J software (National Institutes of Health, Bethesda, MD, USA).
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