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Necrostatin 1 nec 1

Manufactured by Selleck Chemicals
Sourced in China, United States

Necrostatin-1 (Nec-1) is a small molecule that functions as a specific inhibitor of necroptosis, a form of programmed cell death. It acts by targeting the receptor-interacting protein kinase 1 (RIPK1), which is a key regulator of necroptosis. Nec-1 has been widely used in research settings to study the role of necroptosis in various biological and pathological processes.

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12 protocols using necrostatin 1 nec 1

1

Apoptosis assay in leukemia cell lines

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PDX cells were resuspended in QBSF-60 medium (Quality Biological, Gaithersburg, MD) with 20 ng/ml Flt-3 ligand, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM L-glutamine. Patient samples were cultured in StemSpan media (Stem Cell Technologies, Vancouver, Canada) with 20 ng/ml IL-3, 20 ng/ml IL-6, 100 ng/ml FLT-3L, 100 ng/ml SCF. The NALM6 cell line (RIKEN BioResource Center, Ibaraki, Japan) was used within 3 months of culture following validation by short tandem repeat analysis, and maintained in RPMI with 10% heat inactivated fetal calf serum, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM L-glutamine. For some experiments cells were pre-treated with 10 ng/ml TNFα (Lonza Australia, Gordon, NSW), 10 μg/ml Enbrel (etanercept, soluble TNFR2 fused to Fc; Clifford Hallam Healthcare, VIC, Australia), 10 μM Q-VD-Oph (QVD; Sigma-Aldrich, St Louis, MO) or 10 μM Necrostatin-1 (Nec-1; Selleck Chemicals, Houston, TX) for 2 h before the addition of birinapant (TetraLogic Pharmaceuticals, Malvern, PA). Apoptosis was determined using Annexin V/7-AAD staining 24 h later.
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2

Osteoblastic Cell Necrosis under Iron Overload

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Ferric ammonium citrate (FAC) (Sigma, St. Louis, MO, USA), a source of iron, was utilized to mimic iron overload conditions in vivo and in vitro [7 (link), 9 (link), 22 (link)]. To evaluate the cytotoxic effect of iron overload, the MC3T3-E1 osteoblastic cells were exposed to FAC (50, 100, and 200 μM) for 24, 72, and 120 h, respectively. The control groups were treated with 0.9% saline solution. According to our previous experiments, the cell viability of osteoblastic cells significantly decreased from 24 to 120 h [9 (link)]. More importantly, with iron overload exposure time prolonged, the osteoblastic cell necrosis peaked at 120 h. Thus, 120 h FAC-treated time periods were chosen throughout the following study. N-acetyl-cysteine (NAC) (Beyotime Biological Technology, Shanghai, China) was dissolved in phosphate-buffered saline (PBS). The RIPK1 inhibitor Necrostatin-1 (Nec-1) (Selleck, Houston, TX), MLKL inhibitor Necrosulfonamide (NSA) (Selleck, Houston, TX), and RIPK3 inhibitor GSK872 (Selleck, Houston, TX) were dissolved in DMSO solution. Before exposure to FAC, the MC3T3-E1 osteoblastic cells were incubated with or without NAC (1 mM), Nec-1 (20 μM), GSK872 (4 μM), or NSA (4 μM) [9 (link), 23 (link)–25 (link)]. Then, after FAC (200 μM) treatment for 120 h, all samples were collected and analyzed by a microplate reader, flow cytometry, western blots, and confocal microscopy.
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3

Investigating Organelle-Specific Autophagy Pathways

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Antibodies against Drp1, p62, LC3, RIP1, RIP3, TSG101, and CD63 were purchased from Abcam (Cambridge, MA, USA). β-actin, tubulin, and COX IV, which were used as references for the total, cytoplasmic, and mitochondrial fractions, were also acquired from Abcam (Cambridge, MA, USA). Antibodies against Phospho-RIP3 (Thr231/Ser232) and Phospho-Drp1 (Ser616) were purchased from Cell Signaling Technology (Danvers, MA, USA). The Aggresome Detection Kit was acquired from Abcam (Cambridge, MA, USA). MitoTracker Deep Red, the ROS 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) kit, dihydroethidium (DHE) assay kit, and MitoSOX detection kit were purchased from Invitrogen (Carlsbad, CA, USA). Ad-mRFP-GFP-LC3 was supplied by Beyotime (Shanghai, China). Adenoviral vectors for Drp1 short hairpin RNA (shRNA) and Drp1 mutations (Drp1-S616D and Drp1-S616A) were generated by Genechem Technology (Shanghai, China). Related activators and inhibitors, including Mitochondrial division inhibitor 1 (Mdivi-1), N-acetylcysteine (NAC), and Necrostatin-1 (Nec-1), were obtained from Selleck (Shanghai, China). The Protein A/G Magnetic Beads IP Kit was purchased from Thermo Scientific (Waltham, MA, USA), and fetal bovine serum (FBS) and penicillin/streptomycin were procured by Invitrogen (Carlsbad, CA, USA). All other chemicals were supplied by Sigma unless otherwise specified.
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4

Reagents and Antibodies for Cellular Assays

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Juglone, Chloroquine (CQ-1), Ferrostatain-1 (Fer-1), Liproxstatin-1 (Lip-1), Mdivi-1 (Mdivi), Necrostatin-1 (Nec-1) and Z-VAD-FMK (Z-VAD) were purchased from Selleck. 2ʹ,7ʹ-Dichlorodihydrofluorescein diacetate (DCFDA) were purchased from MCE. Antibodies against ACSL4, PTGS2, GPX4, Ki67, 4HNE were purchased from Abcam. Antibodies against XCT, FTH1, p38, pp38, JNK, p-JNK, GSK3α/β, p-GSK3α/β, MMp2 and MMp9 were purchased from Cell Signal Technology. Antibodies against TFRC were purchased from Invitrogen. Antibodies against α-Tubulin and GAPDH, as well as secondary antibodies, were purchased from Hua-an Biotechnology. Details and information of antibodies are provided in Additional file 1: Table S1.
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5

Neuroprotective Inhibitor Combination in OGD/R and aHIOP Models

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Z-VAD-FMK (Z-VAD; Cat# S7023, Selleck Chemicals, Houston, TX, USA) was dissolved in DMSO at a final concentration of 50 μM. Disulfiram (DSF; Selleck Chemicals, Cat# S1680) was dissolved in DMSO at a final concentration of 0.3 μM. Necrostatin-1 (Nec-1; Cat# S8037, Selleck Chemicals) was dissolved in DMSO at a final concentration of 20 μM. R28 cells were pretreated with drugs (or DMSO for control) for 1 hour before OGD modeling (Wang et al., 2018, 2020; Huang et al., 2021). For treatment with a combination of these inhibitors in the OGD/R model, the final concentration of each inhibitor in combination was the same as that of a single inhibitor mentioned above. In the aHIOP model, the amounts of Z-VAD (10 mM), DSF (10 mM), and Nec-1 (20 mM) injected into the OHT eye were 3, 0.5 and 1.5 µL, respectively. The processing time was 30 minutes.
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6

Cellular Necrosis Pathway Inhibition

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BV6 was provided by Genetech Inc. TNFα were obtained from R&D System. Z-VAD was obtained from ApexBio. Necrostatin-1 (Nec1) was obtained from Selleckchem. Necrosulfonamide (NSA) was obtained from Calbiochem.
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7

Investigating OSCC Cell Line Responses

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Human OSCC cell lines CAL27 and SCC9 were purchased from the American Type Culture Collection (ATCC, Manassas, VA). All cell lines were cultured in DMEM/F12 medium supplemented with 10% Fetal Bovine Serum (FBS) and maintained in a 37 °C humidified incubator at with a 5% CO2 atmosphere. The natural product butein and inhibitors, including MG132, cycloheximide (CHX), z-VAD-FMK, Necrostatin-1 (Nec-1), and Chloroquine (CQ) were obtained from Selleck Chemicals (Houston, TX), The inhibitor MG132, and cycloheximide (CHX) were obtained from Thermo Fisher Scientific (Waltham, MA). Antibodies against MCL-1 (#39224), ubiquitin (#3936), HA-tag (#3724), cleaved-caspase 3 (#9664), cytochrome C (#11940), Bax (#5023), VDAC1 (#4661), β-actin (#4970), and α-Tubulin (#3873) were purchased from Cell Signaling Technology, Inc. (Beverly, MA). The FBW7 (#ab109617) and ki67 (#ab16667) antibodies were obtained from Abcam (Cambridge, United Kingdom). The transfection reagent LipofectamineTM 2000 was purchased from Invitrogen (#11668019, Carlsbad CA, USA).
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8

Dissecting Cell Death Pathways

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The antibody against RIP1(H-207) used in immunoprecipitation and antibodies against cIAP1(F-4), cIAP2(H-85), p-ERK(E-4), JNK(D-2), p38(A-12), p-p38(E-1), and GAPDH(6C5) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The antibodies against RIP1, phospho-IκBα, IκBα, and PARP used in western blotting were from BD Biosciences (Marrickville, NSW, Australia). Antibodies against p44/42 MAPK, K48-linkage Specific Polyubiquitin(D9D5), Phopho-SAPK/JNK(Thr183/Tyr185)(81E11), FLIP(D16A8), Phospho-NF-κB p65 (Ser536) and SNAIL(C15D3) were purchased from Cell Signaling Technology (Beverly, MA). Antibody against CYLD was purchased from Abcam(Melbourne, VIC, Australia). The antibody against K63-linked ubiquitin was from Novus Biologicals (Littleton, CO). Antibodies against caspase8 and caspase3 were from Enzo life sciences. The RIP1 kinase inhibitor necrostatin-1 (Nec-1), the Smac mimetic SM406, the caspase inhibitor z-VAD-fmk, the RAF Inhibitor Vemurafenib, the MEK inhibitor Trametinib, and the selective ERK inhibitor SCH772984 were from Selleckchem (Houston, TX). The NF-κB inhibitors PS1145 and BAY-11-7082, the Doxcyclin, the Cycloheximide(CHX), and the MG132 were from Sigma-Aldrich (Castle Hill, NSW, Australia). The NF-κB reporter assay kit was from QIAGEN (Valencia, CA). FITC Annexin V Apoptosis Detection Kit was from BD bioscience (Marrickville, NSW, Australia).
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9

Anti-Cancer Activity of Triterpenoid Saponins

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Four triterpenoid saponins (Figure 1A), OPD′, OPD, LSC, LB, and a diterpenoid saponin (DS), were evaluated for anti-cancer activity in human prostate cancer cells. All five compounds were purchased from Must Bio-Technology, Co., Ltd. (Chengdu, China). The structures of the five test compounds were confirmed based on their nuclear magnetic resonance (NMR) spectra (Supplementary Data Sheet S4). The purity of test compounds (all >96%; Supplementary Data Sheet S3) was determined by high-performance liquid chromatography (HPLC). Fetal bovine serum (FBS) was obtained from BIOIND (Biological Industries, Beit HaEmek, Israel). Sorafenib (positive control) was purchased from Selleck, Co., Ltd. (Shanghai, China). The anti-human RIPK1, anti-C-RIPK1, anti-caspase 8, anti-C-caspase 8, anti-Bim, anti-caspase 10, anti-C-caspase 10, and anti-Bid antibodies were purchased from Cell Signaling Technology, Inc. (Danvers, MA, United States). Necrostatin-1 (Nec-1) and Z-VAD-FMK were purchased from Selleckchem (Houston, TX, United States).
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10

eFT226 Synthesis and Inhibitors

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eFT226 was synthesized by WuXi AppTec (Shanghai, China, purity >98%); ferrostatin-1 (Ferr-1), necrostatin-1 (Nec-1), and z-VAD-FMK (z-VAD) were obtained from SelleckChem (Houston, TX, USA); and other chemicals were obtained from Sigma-Aldrich (Burlington, MA, USA) unless specified elsewhere.
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