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Microflex lrf maldi tof

Manufactured by Bruker
Sourced in Germany

The Microflex LRF MALDI-TOF is a matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometer designed for the analysis of biomolecules. It utilizes a linear reflectron design to provide high mass accuracy and resolution for the identification and characterization of proteins, peptides, and other large molecules.

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11 protocols using microflex lrf maldi tof

1

Synthesis and Characterization of Fluorescent-labeled Peptides

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All peptides (Table 1) were manufactured by solid-phase peptide synthesis using 9-fluorenylmethoxycarbonyl (Fmoc)-chemistry as described previously (Bolscher et al., 2011 (link); Van Dijk et al., 2015 (link)). The peptides were purified by High-Performance Liquid Chromatography (RF-HPLC, Dionex Ultimate 3000, Thermo Scientific, Breda, Netherlands) to a purity of at least 95%. The authenticity was confirmed by mass spectrometry with a Microflex LRF MALDI-TOF (Bruker Daltonik GmbH, Bremen, Germany) as previously described (Bolscher et al., 2011 (link); Van Dijk et al., 2015 (link)). During synthesis, part of Hst1 was labeled with the fluorescent dye ATTO-647N (ATTO-TEC GmbH, Siegen, Germany). An equimolar amount of the dye was coupled to the ε-amino group of the side chain of lysine residue number 17 (lys17, K of Hst1 after removal of the specific protective (ivDde)-OH group by hydrazine (2% hydrazine hydrate).
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2

Tyrocidine-Derived Peptide Synthesis and Purification

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To synthesize tyrocidine-derived
peptide a solid-phase peptide synthesis was conducted via fluoren-9-ylmethoxycarbonyl
(Fmoc) chemistry employing a Siro II synthesizer (Biotage, Uppsala
Sweden), according to the manufacturer’s protocol. Briefly,
utilizing a lysing coupled quencher Dabcyl (Dbc), the peptides (FRET-labeled)
were flanked at their C-termini with a fluorescent probe (FITC) and
flanked at their N-termini with a lysine coupled quencher, Dabcyl.
Next, purification of the peptide was performed to at least 95% purity
via preparative reversed-phase high performance liquid chromatography
(HPLC) with a Dionex Ultimate 3000 system (Thermo Scientific, Breda,
The Netherlands). Authenticity was established via mass spectrometry
utilizing Microflex LRF MALDI-TOF (Bruker Daltonik GmbH, Bremen, Germany)
as communicated earlier.36 (link)
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3

Synthesis and Characterization of PSMA-Targeting Ligands

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Different variants of glutamate-urea-lysine-based PSMA-targeting ligands, varying in their linker moieties, were synthesized using solid phase chemistry, coupled to IRDye700DX, and labeled with 111In. A detailed description of the synthetic procedures and chemical analyses (HPLC, ESI-ion trap, MALDI-ToF) is provided in the supplemental information (Supplementary Materials and Methods and Results, Figure S1, Figure S2, Figure S8).All amino acids were purchased from Iris Biotech GmbH or Fluorochem unless stated otherwise. DOTA-NHS and DOTAGA anhydride were purchased from CheMatech SAS. IRDye700DX was purchased from LI-COR Biosciences. Other reagents were purchased from Fisher Scientific unless stated otherwise and were reagent grade. All water used was highly pure (18 mΩ) and all HPLC-grade solvents were purchased from Biosolve B.V. Identity of the peptides was confirmed using high-resolution mass spectra recorded on a JEOL AccuTOF (ESI-MS), and the dye-conjugated peptides with MALDI-ToF Mass spectrometry on a Bruker Microflex LRF MALDI-ToF.
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4

MALDI-TOF MS for Protein Identity

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EL222-SNAP identity was assessed using MALDI-TOF MS. Purified protein diluted to 1 mg/mL was mixed 1:10 with MALDI-matrix, a saturated solution of Sinapinic acid in 50% Acetonitrile 1% trifluoroacetic acid. The protein solution was then applied to a 96 spot MALDI target plate (Bruker) and air dried for 30 min. Mass spec analysis was conducted using a Microflex LRF MALDI-TOF (Bruker). Sample targets were irradiated using a Nitrogen laser at 337 nm and a pulse length of 3ns with a repetition rate of 20 Hz. Detection occurred in linear mode between 20–80kDa at sampling rate of 1 Gs/s. Protein Calibration Standard 1 (Bruker #206355) was used as an internal calibration.
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5

Synthesis and Characterization of LL-37 Peptides

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The human cathelicidin peptides LL-37, LL-31 and D-enantiomers (D-LL-37 and D-LL-31) (Table 1) were synthesized by solid-phase peptide synthesis using fluoren-9-ylmethoxycarbonyl (Fmoc) chemistry with a Siro II synthesizer (Biotage, Uppsala Sweden) according to the manufacturer’s protocol. Labeling of D-LL-31 with 5,6-carboxytetramethylrhodamine (TAMRA) was carried out in-synthesis using an additional Fmoc-Ahx-OH (NovaBiochem) at the N-terminus. Peptides were purified to at least 95% purity by preparative reversed-phase HPLC on a Dionex Ultimate 3000 system (Thermo Scientific, Breda, the Netherlands). The authenticity was confirmed by mass spectrometry with a Microflex LRF MALDI-TOF (Bruker Daltonik GmbH, Bremen, Germany) essentially as described previously [29 (link), 30 (link)]. Molar concentrations were calculated based on their weight.
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6

Peptide Purification by Preparative RP-HPLC

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Peptides were purified by preparative RP-HPLC (Dionex Ultimate 3000, Thermo Scientific, Breda, The Netherlands) on a Grace Spring column (250 mm x 25 mm, Grace, Deerfield, IL, USA) containing Vydac C18 TP beads,10 μm (Vydac, Hesperia, CA, USA). Elution was performed with a linear gradient from 15 to 45% AcN containing 0.1% TFA in 20 min at a flow rate of 20 ml/min. The absorbance of the column effluent was monitored at 214 nm, and peak fractions were pooled and lyophilized. Re-analysis by RP-HPLC on an analytic Vydac C18-column (218MS54) developed with a similar gradient at a flow rate of 1 ml/min revealed a purity of at least 95%. The authenticity was confirmed by mass spectrometry with a Microflex LRF MALDI-TOF, equipped with a gridless reflectron (Bruker Daltonik GmbH, Bremen, Germany).
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7

Synthesis and Characterization of Fluorescent Histatin-1

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Histatin‐1 was manufactured by solid‐phase peptide synthesis using 9‐fluorenylmethoxycarbonyl (Fmoc) chemistry as described previously 15, 22. Hst1 was purified to at least 95% by high‐performance liquid chromatography (RF‐HPLC, Dionex Ultimate 3000; Thermo Scientific, Breda, the Netherlands). The authenticity was confirmed by mass spectrometry with a Microflex LRF MALDI‐TOF (Bruker Daltonik GmbH, Bremen, Germany) as previously described 15, 22. Fluorescently labeled Hst1 was prepared using the fluorogenic dye ATTO‐647N (ATTO‐TEC GmbH, Siegen, Germany). The ε‐amino group of the side chain of lysine residue number 17 (lys17, K of Hst1 after removal of the specific protective lysine derivative, Fmoc‐Lys(ivDde)‐OH, by hydrazine (2% hydrazine hydrate)) was coupled to equimolar amount of the dye.
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8

Microbiological Wound Culture: Levine vs. Z Technique

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Microbiological wound culture was performed by semi-quantitative wound-swabbing via the Levine method, which was superior to the Z technique, and involved rotating the swab over a 1 cm2 area of the wound [7 (link),8 (link)]. MALDI-TOF rapid diagnostic system (Microflex-LRF MALDI-TOF, Bruker Daltonics GmbH & Co. KG, Bremen, Germany) was utilized for bacterial identification. The MALDI-TOF system involved adding matrix into sample, heated with laser, desorbed, and formed ionized molecules, which then fly into the time-of-flight tube based on their size and charge. The time of flying created a spectrum based on the size and charge of the molecules, which can be matched up with spectral libraries of known organisms [17 ].
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9

Purification and Analysis of Organic Compounds

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All chemicals were obtained
from commercial
sources and used without further purification. Solvents were obtained
from Actu-All Chemicals (Oss, The Netherlands) in HPLC grade and used
without further purification. The reactions were monitored by thin-layer
chromatography (TLC) and mass spectrometry using a Bruker microflex
LRF MALDI-TOF. HPLC was performed on a Waters (Etten-Leur, The Netherlands)
HPLC system using a 1525EF pump and a 2489 UV/vis detector. For preparative
HPLC, a Dr Maisch GmbH (Ammerbuch, Germany) Reprosil-Pur 120 C18-AQ
10 μm (250 × 20 mm) column was used (12 mL/min). For analytical
HPLC, a Dr Maisch GmbH Reprosil-Pur C18-AQ 5 μm (250 ×
4.6 mm) column was used, applying a gradient of 0.1% TFA in H2O/CH3CN 95:5 to 0.1% TFA in H2O/CH3CN 5:95 in 40 min (1 mL/min).
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10

MALDI-TOF analysis of protein conjugation

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MALDI-TOF mass spectrometry was performed to determine the success of the conjugation reaction. The matrix was prepared with 20 mg/mL α-CHCA in a 70/30 (v/v) ACN:5% formic acid (aq.) mixture. The plating procedure was as follows: 1 µL of matrix was plated and then allowed to dry. Then, 1 µL of 2 mg/mL Protein A solution was plated. Finally, 1.5 µL of matrix was added. All samples were analyzed using a Bruker MicroflexTM LRF MALDI-TOF in linear mode (105 cm flight path). Laser level was between 20 and 70%, detector gain was 2827 V, and the analysis used positive ion spectrum. The same procedure was carried out for DBCO-Protein A. Reported MW/charge (M/Z) values are the average of two peak measurements. The standard deviation of these measurement was reported as the error bars.
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