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7 protocols using anti gef h1

1

Comprehensive Antibody Panel for PAK Family

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Anti-PAK1, anti-PAK2 and anti-GEFH-1 were purchased from Cell Signalling Technology. Anti-c-Myc and anti-PAK5 were acquired from Santa Cruz. Anti-Cortactin from Upstate. Anti-GAPDH from Millipore. Anti-p-GEFH-1 (Ser885) from Abcam. Anti-PAK3 from New England Biolabs and anti-PAK6 from Calbiochem. Anti-GFP from Roche Life Science. Anti-β-Actin and anti-β-Tubulin from Sigma Aldrich. Anti-HMWMAA and anti-human IgG kind gift from Sophia Karagiannis, King's College London (KCL). Anti-PAK4 was previously described [17 (link)]. Horseradish peroxidase (HRP) conjugated secondary antibodies were purchased from DAKO. The Alexa Fluor 488 conjugated antibodies and Phalloidin from Invitrogen. GFP-PAK1r, GFP-PAK4r, HA-PAK4r and HA-PAK4K350/351Mr were constructed by site-directed mutagenesis, according to the manufacturer's instructions, using the QuikChange Multisuite II kit (Stratagene). The Myc-PDZ-RhoGEF and Myc-PDZ-RhoGEFΔDH were kind gifts from John Masters, University College London (UCL). The RhoA Biosensor was generously provided by Maddy Parsons, (KCL). IPA-3 was purchased from Sigma.
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2

Protein Expression Analysis by Western Blot

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The expression of protein was assessed by western blot analysis, and its expression in the samples was normalized to β-actin expression. Cells and tissues were lysed in RIPA buffer with freshly added protease inhibitor cocktail. Total lysates were separated on SDS-PAGE gels and transferred to PVDF membranes (Millipore). The immunoblots were blocked with 5% BSA at room temperature for 1 h and incubated at 4 °C overnight with anti-HIF-1α (1:200, Santa Cruz), anti-GEF-H1 (1:1000, Cell Signaling), anti-RhoA (1:500, Immunoway), anti-E-cadherin (1:500, Santa Cruz), anti- β-actin (1:3000, Santa Cruz), anti-CD63 (1:2000, Abcam), and anti-TSG101 (1:1000, Santa Cruz). After incubation with the secondary antibody, the membranes were visualized with an enhanced chemiluminescence system kit (Millipore, USA) according to the manufacturer's protocol.
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3

Western Blot Analysis of Signaling Proteins

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The samples used for western blotting were separated by SDS-PAGE. After electrotransfer, the polyvinylidene fluoride (PVDF) membranes (Merck Millipore, Darmstadt, Germany) were probed with anti-GEF-H1, p(Thr18/Ser19)-MLC, MLC, anti-GST (Cell Signaling Technology, Inc., Danvers, MA, USA), anti-LARG, anti-Ect2, anti-RhoA, anti-β-actin, anti-α-tubulin, or anti-FLAG (Sigma-Aldrich, St. Louis, MO, USA) antibodies, followed by horseradish-peroxidase-conjugated goat anti-rabbit or rabbit anti-mouse antibodies (Zymed Laboratories, Inc., South San Francisco, CA, USA). The blots were developed using an ECL Western Blotting Kit (GE Healthcare, Little Chalfont, UK).
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4

Protein Extraction and Immunoblotting Protocol

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Leupeptin, pepstain, aprotinin, phenylmethylsulfonyl fluoride (PMSF), dithiothreitol (DTT), Triton X-100 (TX100), sodium dodecyl sulfate (SDS), propidium iodide and other chemicals were purchased from Sigma (Sigma, St. Louis, MO, USA). The following antibodies were used: anti-RhoA (Cell Signaling Tech, Danvers, MA, Cat# 2117), anti-GEF-H1 (Cell Signaling Tech, Danvers, MA, Cat# 4076), anti-beta-actin (Cell Signaling Tech, Danvers, MA, #4970), anti-microtubule-associated protein 2 (MAP2, Sigma, St Louis, Cat# M9942), and anti-phospho-GEF-H1 (Ser885) (Abcam, Cambridge, MA, Cat# ab94348). The anti-mouse or anti-rabbit secondary antibodies were purchased from Jackson ImmunoResearch (PA, USA).
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5

Antibody Validation for ASAP1 and Related Proteins

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A monoclonal mouse anti-ASAP1 antibody was purchased from Abnova. A polyclonal rabbit anti-ASAP1 serum was raised in our lab as previously described (31 (link)). Anti-paxillin and anti-GM130 antibodies were purchased from BD Biosciences, anti-ROCK2 antibody from BD Transduction Laboratories, anti-HABP4 antibody from Bioss USA, anti-Akt, anti-Arf6, anti-GEF-H1, anti-JNK2, anti-PRKAR1A (PKA RI-α/β), anti-ROCK1, anti-SMARCA5 (SNF2H), anti-TIAM1, and anti-VAV2 from Cell Signaling Technology, anti-β-COP antibody from Invitrogen, IRDye680 anti-mouse IgG and IRDye800 anti-rabbit IgG were from LI-COR, and anti-Brag2 (IqSec1) antibody was from Sigma Precision Antibodies.
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6

Western Blot Analysis of Cytoskeletal Regulators

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Cells were washed once with ice-cold PBS and lysed in ice-cold RIPA buffer (50 mM Tris, pH 7.5, 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholate, 1 mM EDTA, 1× protease inhibitor cocktail, and 1× phosphatase inhibitor cocktail). Cell debris was removed by centrifugation at 14,000 g for 15 min at 4°C. Protein concentration in the supernatants was determined via Bradford assay. Equal amounts of total protein were mixed with 5× Laemmli sample buffer, boiled at 95°C for 10 min and separated by SDS-PAGE. After electrophoresis, proteins were transferred on a PVDF membrane using a semidry blotter. Blots were blocked for 30–60 min at RT with 5% BSA in TBS-T (20 mM Tris, pH 7.6, 137 mM NaCl, and 0.1% Tween-20) and incubated overnight at 4°C with primary antibodies anti–GEF-H1 (1:200; 55B6; Cell Signaling), anti-Ect2 (1:500; C-20; Santa Cruz Biotechnology), and anti–α-Tubulin (1:20,000; clone B-5-1-2; Sigma-Aldrich) in blocking solution. Membranes were washed three times with TBS-T and incubated with HRP-conjugated anti–mouse (for anti–α-Tubulin) or anti–rabbit (for anti–GEF-H1) secondary antibodies (1:20,000) for 1 h at RT. After additional washing steps with TBS-T and TBS (20 mM Tris, pH 7.6, and 137 mM NaCl), proteins were visualized with ECL Western blotting substrate.
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7

Antibody Panel for Autophagy and Cytoskeleton Regulation

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Anti-Atg5 and anti-LARG antibodies were purchased from Sigma-Aldrich (St. Louis, MO). Anti-paxillin, anti-p62, anti-actin, and anti-tubulin antibodies were purchased from BD Biosciences (San Jose, CA), MBL (Aichi, Japan), Millipore (Billerica, MA), and Invitrogen (Carlsbad, CA), respectively. Anti-GEF-H1, anti-RhoB, and anti-RhoC antibodies were from Cell Signaling Technologies (Danvers, MA). Anti-RhoA and anti-Rac1 antibodies were from Cytoskeleton Inc. (Denver, CO). Anti-LC3, anti-phosho FAK and anti-GAPDH were purcharsed from NanoTools (Teningen, Germany), Abcam (Cambridge, UK) and Santa Cruz Biotechnology (Santa Cruz, CA), respectively. Bafilomycin A1 was obtained from Sigma-Aldrich. Rho inhibitor 1 was obtained from Cytoskeleton Inc. and Chemdea LLC. (Ridgewood, NJ), respectively. All other chemicals were from Wako Co. (Osaka, Japan).
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