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Sc 398394

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Sc-398394 is a laboratory instrument designed for performing various analytical and experimental procedures. It is capable of precise measurement, detection, and analysis of samples. The core function of this product is to facilitate data collection and processing in a research or testing environment. Detailed specifications and intended applications are not available.

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11 protocols using sc 398394

1

Western Blot Analysis of PPARα Protein

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For the detection of PPARα, protein was isolated out of snap‐frozen liver tissue with RIPA lysis buffer, supplemented with protease inhibitor cocktail (Roche). Protein samples containing 30 μg of protein were separated by electrophoresis in a 10% gradient SDS polyacrylamide gel and transferred to nitrocellulose membranes (pore size, 045 μm). After blocking the membranes with a ½ dilution of Starting Block/PBST 0.1% (Thermo Fisher Scientific), membranes were incubated overnight at 4°C with a primary antibody against PPARα (1:1,000, catalog sc‐398394, Santa Cruz Biotechnology). Blots were washed with PBST 0.1% and then incubated for 1 h at room temperature with anti‐mouse HRP antibody (1:10,000, catalog GENA931, Sigma‐Aldrich NV.). Immunoreactive bands were visualized detected and quantified using an Amersham Imager 600 (GE Healthcare Life Sciences). After visualization of PPARα, the process was repeated with a primary antibody against Actin (1:5,000, catalog MA5‐15739, Life Technologies Europe).
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2

Molecular Mechanisms of Nur77 Regulation

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NK (purity, >98%) was acquired from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China) (495–31–8) (250 mg administered). Lipopolysaccharide (LPS, 297–473–0) was acquired from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against α-SMA (bs-10196R) and collagen type I (collagen-I) (bs-0578R) were obtained from Bioss (Woburn, MA, USA). Antibodies against PPARα (sc-398394), SREBP-1 (sc-365513), caspase-1 (sc-56036), IL-23 (sc-271279), ASC (sc-514414), Lipin-1 (sc-376874), Nur77 (sc-365113), NLRP3 (ab4207), P2X7r (sc-514962), and IL-1R1 (sc-393998) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against NLRP3 (ab4207), Lipin-1 (ab181389), P2X7r (ab307718), MPO (ab208670), and GAPDH (ab8245) were obtained from Abcam (Cambridge, MA, USA). Csn-B (a Nur77 agonist, 321661–62–5) was purchased from Beyotime Biotechnology (Shanghai, CN, USA). rNur77 (ab152448) was purchased from Abcam (Cambridge, MA, USA).
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3

Immunohistochemical Analysis of Liver PPARα

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Immunohistochemical analyses of liver sections were performed using the ImmPRESS Universal Reagent kit (Vector Laboratories, Burlingame, CA, USA, #SP-2001). The deparaffinisation of the tissue sections were followed by antigen unmasking with antigen retrieval buffer (citrate-based solution, pH 6.0; 95 °C for 20 min). After blocking with ready-to-use normal horse serum (2.5%), samples were incubated with primary antibodies against PPARα (sc-398394, Santa Cruz Biotechnology, Inc. Oregon, USA) for 90 min in room temperature. After washing, samples were left for 30 min with ImmPRESS reagent and then dyed with a substrate/chromogen mixture (ImmPACT™ DAB). After washing, samples were counterstained with haematoxylin and mounted (Aqueous Permanent Medium, Dako, Denmark). A Zeiss Axio Imager Z2 optical microscope equipped with the Zen Pro 2011 acquisition program was used to acquire the images.
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4

Histological Analysis of Cardiac Tissue

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The left ventricular specimens for microscopy were fixed in 4% paraformaldehyde, embedded in paraffin, and 2.5 µm-thick sections were prepared. Hematoxylin–eosin (H&E) and Elastica-Masson-Goldner (EMG) staining were performed for histological analysis. Immunohistochemical staining of PPARα and ATF5 were conducted. Briefly, sections were deparaffinized in xylene, rehydrated with a series of graded ethanol, and heated in 10 mM citrate buffer (pH 6.0) for antigen retrieval. 3% hydrogen peroxide was applied afterward to quench the activity of endogenous peroxidase. The sections were then blocked with 0.5% bovine serum albumin serum in PBS. Subsequently, the sections were incubated with rabbit anti-ATF5 monoclonal antibody (diluted 100-fold; ab184923, Abcam, Cambridge, UK) or mouse anti-PPARα monoclonal antibody (diluted 100-fold; sc-398394, Santa Cruz Biotechnology, Inc., USA) overnight at 4 °C, followed by visualization of antigens by use of Histofine simple stain MAX-PO (Multi) (Nichirei Biosciences Inc., Tokyo, Japan) using diaminobenzidine (Nichirei Biosciences Inc.) as a substrate. Sections incubated in PBS in place of the primary antibodies were used as controls for immunostaining procedures.
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5

EMSA analysis of nuclear receptor binding

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HEK293 cells were transiently transfected with LXRα, PPARα, or RXRα (HsCD00079702) plasmids (The Biodesign Institute). Nuclear extracts from these cells were made with NE-PER Nuclear and cytoplasmic extraction reagents (ThermoFisher) following the manufacturer’s protocol and the protein content measured [14 (link)]. Double-stranded DNA oligonucleotides containing the sequence of the APOF regulatory element complex, a mutated form of this complex, and an idealized nuclear receptor sequence were synthesized by Integrated DNA Technologies (Table 2). Oligonucleotides were labeled with 32P by T4 polynucleotide kinase mediated transfer from [γ-32P]-ATP (Perkin Elmer, Waltham, MA). For electrophoretic mobility shift assays, 32P-labeled oligonucleotides were incubated for 30 min at room temperature with nuclear extracts from cells overexpressing LXRα, PPARα, or RXRα in the absence or presence of excess unlabeled probe or nuclear receptor antibody following the procedure of Ye, et al. [15 (link)]. Antibodies to PPARα (sc-398394) and LXRα (sc-377260) were from Santa Cruz Biotechnology, Inc. (Dallas, TX). DNA-protein complexes were separated on a 5% polyacrylamide gel [16 (link)]. The gel was dried under vacuum and exposed to x-ray film overnight at −70°C.
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6

Western Blot Analysis of Cardiac Proteins

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The mice's left atrium was homogenized in RIPA lysis buffer (P0013 B, Beyotime Biotechnology, China) containing protease inhibitor cocktail (1 : 100, Sigma). Total protein (50 μg) was separated by 10% SDS-PAGE gels and then separated protein was transferred onto a PVDF membrane. The membrane was blocked with 5% skimmed milk and subjected to primary antibodies overnight at 4°C against ANGPTL4 (1 : 200; ab196746, Abcam), PPARα (1 : 200; sc-398394, Santa Cruz), PPARγ (1 : 200; sc-7273, Santa Cruz); CPT-1 (1 : 500; ab234111, Abcam), SIRT3 (1 : 200; ab246522, Abcam), and ß-actin (1 : 1000; ab8226, Abcam), followed by incubation with HRP-conjugated secondary antibody. Protein bands were visualized using Enhanced Chemiluminescence Plus (Millipore, MA, USA). Relative expression of proteins was normalized to ß-actin.
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7

Quantitative Protein Expression Analysis

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Total protein was extracted from liver tissues and quantified by the BCA method. Fifty micrograms of protein was loaded onto a 10% SDS-PAGE gel for electrophoresis. The membranes were routinely washed and blocked with 5% nonfat dry milk in PBST (containing 0.05% Tween 20), oscillated at room temperature for 1 h, and incubated overnight at 4 °C with β3-AR (Santa Cruz, sc-515763, 1:500 dilution), peroxisome proliferator-activated receptor-alpha (PPAR-α) (Santa Cruz, sc-398,394, 1:100 dilution), peroxisome proliferator-activated receptor-gamma (PPAR-γ) (Santa Cruz, sc-81,152, 1:500 dilution), mitochondrial carnitine palmitoyltransferase-1 (mCPT-1) (Abcam, Cambridge, ab104662, 1:100 dilution) and CD36 (Santa Cruz, SC-7309, 1:100 dilution) primary antibodies. After rinsing in TBS, the membranes were incubated with secondary antibodies and oscillated at room temperature for 1 h. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) levels were measured as an internal control with anti-GAPDH (1:1000) antibodies (Zhongshan Golden Bridge Bio, China). A Bio-Rad imaging system and ImageJ software were used to detect the immunoreactive bands and to quantify each sample.
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8

Protein Detection Assay Protocol

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We used the following reagents to detect proteins: monoclonal anti-G3BP (Sigma-Aldrich WH0010146M1), polyclonal anti-TIA1 produced in rabbit (Sigma-Aldrich SAB4301803), anti-GAPDH (sc-47724, Santa Cruz Biotechnology), anti-PPARA (sc-398394, Santa Cruz Biotechnology), anti-PPARG (sc-7273X, Santa Cruz Biotechnology), anti-PPARD (sc-74517, Santa Cruz Biotechnology), antiphospho-4EBP (Ser65, sc-293124), and anti-4EBP (sc-9977, Santa Cruz Biotechnology).
Secondary antibodies for immunofluorescence: anti-rabbit IgG Cy3-conjugated (Sigma-Aldrich C2306), anti-mouse IgG Cy3 conjugated (Sigma-Aldrich C2181), and anti-rabbit IgG Cy5 conjugated (Invitrogen A10523).
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9

Immunoprecipitation and Western Blot Analysis of AQP4 and PPAR-α

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M064 cells were lysed in the IP lysis buffer (P0013; Beyotime Biotechnology) according to the provided instructions. Cell lysate containing 200 μg of protein was incubated with the Dynabeads® Protein G and 2 μg AQP4 antibody (at a dilution ratio of 1: 100, sc‐32739, Santa Cruz Biotechnology) or IgG (negative control) at 4°C for 4 h. Finally, the immunoprecipitation complex was analysed by Western blot using the PPAR‐α antibody (at a dilution ratio of 1:100, SC‐398394, Santa Cruz Biotechnology).
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10

PLA for PPARα and ERRα Interaction

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PLA was performed using the DuoLink In Situ Red Starter Kit Mouse/Rabbit (DUO92101, Sigma). μ-slide 8-wells (Ibidi) seeded with HepG2 cells were fixed, permeabilized and blocked with the Duolink Blocking Solution for 1 h at 37 °C. Next, the slides were incubated overnight at 4 °C with mouse anti-PPARα (1 μg/ml, sc398394, Santa Cruz) and rabbit anti-ERRα (1 μg/ml, ab76228, Abcam) in Duolink Antibody Diluent, followed by 1 h incubation at 37 °C with Duolink In Situ PLA Probe anti-rabbit PLUS and anti-mouse MINUS (10× dilution). All washing, ligation and amplification steps were performed following the manufacturer's instructions.
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