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12 protocols using mouse anti gst

1

GST Pull-Down Assay for Protein-Protein Interactions

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For GST pull-down assays, HEK 293T cells were co-transfected with plasmids expressing GST or GST fusion proteins together with GFP or GFP-DLC1 constructs. Forty-eight hours after transfection, cells were lysed with 1X RIPA buffer (EMD Millipore) (0.05M Tris-HCl pH 7.4, 0.15mM NaCl, 0.25% deoxycholic acid, 1% NP-40, 1mM EDTA) containing protease and phosphatase inhibitors. Supernatants were collected after centrifugation at 14000 rpm for 10 min at 4° C, and protein was quantified with a BCA kit (Thermo Scientific) following manufacturer’s instructions. One and one-half milligrams of protein from each cell extract were used for pull-down assays by adding 30 μl of glutathione Shepharose-4B slurry (GE Healthcare) and rotating 4 hours at 4° C. Pellets were extensively washed for 3–4 times with 1X RIPA buffer and incubated with 40 μl loading buffer. After separating protein samples by SDS-PAGE, immunoblotting was used to detect protein signals with mouse anti-GST (Santa Cruz Biotechnology) or mouse anti-GFP (Covance) antibodies. Horseradish peroxidase-conjugated anti-mouse IgG (GE Healthcare) was used as the secondary antibody. Immunocomplexes were visualized with an ECL kit (Amersham).
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2

Antibody Production and Validation

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Rat anti-HBoV1 NS1C antibody was produced previously (108 (link)). The following primary antibodies were purchased: mouse anti-Flag (number 200-301-B13) from Rockland (Limerick, PA); rabbit anti-Strep-tag II (number ab183907) from Abcam (Waltham, MA); mouse anti-β-actin (number A5441) from MilliporeSigma; mouse anti-Ku70 (number SC-17789) and mouse anti-GST (number SC-138) from Santa Cruz (Dallas, TX); rabbit anti-Ku70 (number A7330), rabbit anti-HSPA8 (number A14001), rabbit anti-GTF2F1 (number A2489), rabbit anti-ORC3 (number A15415), rabbit anti-DNA-PKcs (number A1419), rabbit anti-DHX9 (number A4563), rabbit anti-SNW1 (number A14580), rabbit anti-PABPC1 (number A14872), rabbit anti-DDX17 (number A17078), rabbit anti-RPA1 (number A0990), and rabbit anti-MCM3 (number A1060) from Abclonal (Woburn, MA); rabbit anti-SFPQ (number A301-321A-T) from Bethyl (Montgomery, TX); rabbit anti-HSPA1b (number A59434-020) from EpiGentek (Farmingdale, NY); rat anti-HSPA8 (number NBP1-97868) from Novus Bio (Centennial, CO); anti-BrdU (clone B44) from BD Biosciences (San Jose, CA); and anti-GAPDH (number 2118S) from Cell Signaling (Danvers, MA).
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3

Western Blotting of Cell Lysates

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Whole cell lysates were prepared from frozen cell pellets by lysis
in trichloroacetic acid as described previously [20 (link)]. Protein concentrations were measured by a
bicinchoninic acid assay (Thermo Scientific # 23225), and equal amounts (10
or 20 μg) were loaded per lane. Proteins were resolved by
SDS–PAGE and transferred to PVDF membranes (Immobilon-P; Millipore)
in a submerged tank. Membranes were blocked (1 hr, room temperature) in TTBS
(0.2% Tween-20, 20 mM TRIS-HCl, 500 mM NaCl, pH 7.5) containing 5% non-fat
milk, and then probed with antibodies in the equivalent solution. Primary
antibodies were mouse anti-HA (1:1000, Covance #MMS101R), mouse anti-V5
(1:5000, Invitrogen #46–0705) mouse anti-phospho-p44/42 (1:1000, Cell
Signaling Technology #9101), mouse anti-GST (1:1000, Santa Cruz
Biotechnologies #sc-138), rabbit anti-myc (1:200, Santa Cruz Biotechnologies
#sc-789), and rabbit anti-G6PDH (1:100000, Sigma #A9521). HRP-conjugated
secondary antibodies were goat anti-rabbit (1:3000, Jackson ImmunoResearch
#111–035-144), and goat anti-mouse (1:3000, BioRad #170–6516).
Enhanced chemilluminescent detection used a BioRad Clarity substrate
(#170–5060). Densitometry was performed using ImageJ software.
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4

Versatile Cell Line Assay Reagents

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HeLa, HEK293T, and RAW 264.7 cells were obtained from American Type Culture Collection, and MEF cells were a gift from A. Hoffmann (University of California Los Angeles). Glutathione–agarose beads and Ni–nitrilotriacetic acid (NTA) agarose beads were purchased from BioBharati LifeScience Pvt Ltd. Mouse anti-HA antibody was purchased from BioLegend. Rabbit anti-NEMO, rabbit anti-IKK2, rabbit anti-His, rabbit anti-Ub, rabbit anti-Myc, rabbit anti-γ-actin, and rabbit anti-ERK2 were purchased from BioBharati LifeScience Pvt Ltd. Mouse anti-p84 was purchased from GeneTex. Mouse anti-GST, rabbit anti-p65/RelA, and rabbit anti-IκBα were from Santa Cruz Biotechnology. Rabbit anti-p100/p52 was a gift from N. Rice (National Cancer Institute; Frederick, MD). Rabbit anti–phospho-SAPK (stress-activated protein kinase)/JNK (Thr183/Tyr185), rabbit anti-SAPK/JNK, rabbit anti–phospho-p38 MAPK (Thr180/Tyr182), rabbit anti-p38 MAPK, rabbit anti–phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204), and rabbit anti–phospho-IKKα/β (Ser177/181) were purchased from Cell Signaling. Horseradish peroxidase–conjugated anti-rabbit and antimouse secondary antibodies were from BioBharati LifeScience Pvt Ltd as was mouse TNF-α. LPS was purchased from Sigma. Mouse LTβR was purchased from Abcam.
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5

Western Blot Analysis of GST, TG2, and FLAG

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Samples were boiled in sample loading buffer at 100 °C for 10 min, separated by SDS-PAGE, and transferred onto NC membranes for blotting. Membrane blocking was performed for 1 h with 5% skim milk in TBST at RT. After blocking, the membranes were incubated with mouse anti-GST (Santa Cruz Biotechnology), TG27 (link), and FLAG antibodies (Sigma-Aldrich) at 4 °C overnight. The membranes were washed with TBST three times each for 10 min. Primary antibodies were detected with anti-rabbit HRP-conjugated secondary antibody (1:1000, Jackson Laboratory) or anti-mouse HRP-conjugated secondary antibody (1:1000, Pierce). The samples were incubated for 1 h at RT, washed three times with TBST, reacted with Supersignal West Pico solution (Pierce) for 5 min, and exposed to X-ray film (Agfa). For CBB staining, SDS-PAGE gels were stained for 10 min using staining solution (0.1% Coomassie Brilliant Blue G250, 10% acetic acid, 50% methanol, and 40% H2O2) and destained with distilled water overnight.
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6

Immunoblotting Antibody Characterization

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Lysates were analysed by standard chemiluminescent immunoblotting techniques. Primary antibodies: mouse anti-actin 1:2000 (C-4; Sigma Aldrich), mouse anti-Biotin 1:400 (33; Santa Cruz Biotechnology), rat anti-Ft 1:500 (Sopko et al., 2009 (link)), mouse anti-FLAG 1:5000 (M2; Sigma Aldrich), mouse anti-GST 1:500 (B-14; Santa Cruz Biotechnology), rabbit anti-HA 1:1000 (C29F4; Cell Signaling Technology), rat anti-HA 1:2000 (3F10; Roche Applied Science) and mouse anti-V5 1:5000 (R960-25; Thermo Fisher Scientific).
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7

Cross-linking and Immunoprecipitation of Protein Complexes

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Transfected cells were incubated with DSP (Pierce) for 30 minutes at room temperature in PBS according to manufacturer’s instructions. The reaction was quenched with 100 mM glycine in PBS and cells lysed in RIPA buffer as described above. Immunoprecipitation of lysates was undertaken using 2 μg mouse anti-14-3-3τ (Abcam) or mouse anti-GST (Santa-Cruz Biotechnology) as an isotype control. Protein complexes were precipitated using Dynabeads Protein G (Life Technologies) and washed four times in RIPA buffer. Elution was undertaken using 10 μl 2X NuPAGE sample buffer supplemented with 100 mM DTT and Western Blot performed.
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8

Comprehensive Western Blotting Protocol

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Western blotting was performed as per standard protocol. The antibodies used were as follows: rabbit anti-MeCP2 (Cell signaling, D4F3), 1:1000; Chicken anti-MeCP2 (custom antibody, gift from Dr J.M. LaSalle), 1:1000; goat anti-histone H1 antibody (Santa cruz, sc-34464), 1:1000; rabbit anti-Histone H3 (Cell signaling, D1H2), 1:3000; mouse anti-Histone H4 (abcam, ab31830), 1:500; VeriBlot for IP secondary antibody (abcam, ab131366), 1:4000; Rabbit anti-Chicken HRP (IgY H&L) (abcam, ab6753), 1:50000; rabbit anti-Ezh2 (Cell signaling, D2C9), 1:2000; rabbit anti-H3K27me3 (Cell signaling, C36B11), 1:2000; rabbit anti-GAPDH (Cell signaling, D16H11) 1:3000; mouse anti-GST (Santa Cruz, sc-138) 1:200; rabbit anti-DNMT1 (Cell signaling, D63A6) 1:2000; rabbit anti-DNMT3B (Cell signaling, E8A8A) 1:1000; mouse anti-actin (Santa cruz, sc-47778) 1:1000.
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9

Endothelial Marker Protein Quantification

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Protein levels for endothelial markers were assessed using the Odyssey Sa infrared imaging system (LI-COR). β-actin was used as housekeeping gene. The following primary antibodies were used: mouse anti-Claudin5 (1:500, Invitrogen), rabbit anti-Caveolin-1 (1:2000, Abcam), rabbit anti-Occludin (1:2000, Invitrogen), rabbit anti-VE-cadherin (1:2000, Abcam), mouse anti-ZO-1 (1:2000, Thermo Scientific), rabbit anti-Rab7a (1:1000, Abcam), mouse anti-GST (1:1000, Santa Cruz), rabbit anti-Ccz1 (1:1000, Abcam), rabbit anti-EEA1 (1:2000, Abcam), rabbit anti-LAMP1 (1:1000, Abcam), mouse anti-β-actin (1:5000, Novus Biologicals), p62 (1:10000, Abcam) and Atg5 (1:500, Cell Signaling). IR-Dyes 680 and 800 (1:10000, LI-COR) were used as secondary antibodies. Protein expression levels were quantified using the Empiria Studio software (LI-COR), normalized on their respective β-actin expression values and presented as a percentage of protein levels in control conditions.
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10

Immunoblotting and Immunofluorescence Assays

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For immunoblotting goat anti-Hevin (1:1000, R&D Systems, Cat# AF2836), mouse anti-Tubulin (1:1000, Sigma, DM1A), rabbit anti-BIP (1:1000, Cell Signaling, CB0B12), and mouse anti-GST (1:500, Santa Cruz, B14) antibodies were used as primary antibodies. Horseradish peroxidase-conjugated anti-mouse IgG, anti-rabbit IgG, and anti-goat IgG (1:20,000, respectively, SeraCare) antibodies were used as secondary antibodies. For immunofluorescence, rabbit anti-RFP (1:500, Rockland, Cat# 600-401-379), goat anti-Hevin (1:500, R&D Systems, Cat# AF2836), and mouse anti-GM130 (1:500, MBL, Cat# M179-3) were used as primary antibodies. Alexa Fluor 488 donkey anti-goat IgG H&L (1:500, Thermo Fisher Scientific), DyLight 594 donkey anti-rabbit IgG H&L (1:500, abcam), and DyLight 594 donkey anti-mouse IgG H&L (1:500, abcam) antibodies were used as secondary antibodies.
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