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7 protocols using swine anti rabbit igg

1

Protein Expression Analysis by Western Blot

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Cells were lysed in urea lysis buffer (7 M urea, 0.1 M DTT, 0.05% Triton X-100, 25 mM NaCl, 20 mM Hepes pH 7.5). Equal amounts of protein were separated by SDS polyacrylamide gel electrophoresis (SDS PAGE), transferred to Hybond-C nitrocellulose membrane (Amersham Pharmacia Biotech, Buckinghamshire, UK) and hybridised to an appropriate primary antibody and HRP-conjugated secondary antibody for subsequent detection by ECL. Primary antibody against β-actin was purchased from Abcam (Cambridge, UK). Antibodies against Bax and Bcl2 were purchased from Santa Cruz Biotechnology (CA, USA). The secondary antibodies, HRP-conjugated rabbit anti-mouse IgG and swine anti-rabbit IgG, were obtained from DakoCytomation (Glostrup, Denmark).
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2

Immunoblotting of Epithelial-Mesenchymal Transition Markers

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Cells were lysed in urea lysis buffer (7 M urea, 0.1 M DTT, 0.05% Triton X-100, 25 mM NaCl, 20 mM Hepes pH 7.5). Equal amounts of protein were separated by SDS polyacrylamide gel electrophoresis (SDS PAGE), transferred to Hybond-C nitrocellulose membrane (Amersham Pharmacia Biotech, Buckinghamshire, UK) and hybridised to an appropriate primary antibody and HRP-conjugated secondary antibody for subsequent detection by ECL. Antibodies against Fibronectin and β-catenin were purchased from BD Biosciences (Oxford, UK). Anti-Zeb1, Anti-vimentin and β-actin were purchased from Abcam (Cambridge, UK). Anti-COX-2 (C-20) was purchased from Santa Cruz biotechnology (Texas, USA). Secondary antibodies were HRP-conjugated rabbit anti-mouse IgG and swine anti-rabbit IgG, were obtained from DakoCytomation (Glostrup, Denmark).
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3

Dual Immunohistochemical Labeling of CTB and FG

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Immunohistochemical detection of transported CTB and FG was carried out on coronal sections. Sections were incubated with a primary antibody against CTB raised in goat (1:2000; List Biologicals, INC, 703) and rabbit antibody Anti-Fluorescent Gold (1:2000; Chemicon, AB153), diluted in a solution containing 5% of normal donkey serum (NDS) (Jackson inmunoresearch Laboratories, 017-000-121), 5% normal swine serum (Jackson immunoresearch Laboratories, 014-00-121), 0.04% triton X-100 in phosphate buffer (PBS) pH 7.4 overnight. After rinsing in PBS, sections were incubated for 2 h in a solution containing 5% of NSwS, 5% NDS, swine anti-rabbit IgG (1:50, Dako, Z0196) and donkey anti-goat (Jackson Immunoresearch, 705-065-147) diluted in PBS for 90 min; after washes sections were incubated in a solution containing 5% NDS and Goat PAP (1:600 Sigma, P1901) and afterwards washed in PBS and visualized in brown with DAB (Sigma, D5637). Section were washed in PBS and incubated in a solution containing 5% NSwS and Rabbit PAP (1:50 Dako, Z0113 diluted in PBS and visualized using Vector VIP Peroxidase (HRP) Substrate Kit (Vector laboratories, SK-4600). Sections were mounted on gelatin-coated glass slides, dried at RT and coverslip with Dpex (VWR International).
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4

Immunohistochemical Detection of Tau Pathology

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Tissue sections were treated as described above. An additional blocking step before the addition of milk was used to reduce endogenous peroxidase activity, using methanol containing 0.3% hydrogen peroxide. Sections were incubated with the respective primary antibody, AT8 (Thermoscientific, 1:600), AT100 (Thermoscientific, 1:500), AT180 (Thermoscientific, 1:500), PHF1 (source: Peter Davies; 1:500) or Aβ-XP (Cell Signaling, 1:200), prior to tracer labelling. Incubation with a secondary biotinylated antibody (either rabbit anti-mouse IgG or swine anti-rabbit IgG; Dako, 1:200, 30 min) was followed by treatment with avidin-biotin complex (Vector Laboratories; 30 min). Tyramine signal amplification (red or green; 1:200) was used as a substrate for horseradish peroxidase. Sections were mounted with either DAPI-containing fluorescent mounting medium or Nissl Neurotrace 640, as described above.
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5

Notch2 Receptor Expression in Bone

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To assess treatment effect on the level of Notch2 receptor protein expression, immunohistochemistry was conducted on bone sections collected from the MTX time course study. Briefly, sections were deparaffinized, gradually hydrated and were quenched in 3% H2O2 and incubated in Tris EDTA (pH 9) for antigen retrieval. After blocking with 5% Pig serum, 4%BSA, 0.1% Triton-X 100, 0.05% Tween 20 for 60 min, sections were then incubated with primary antibody rabbit anti-Notch2-cleaved N-terminus (Merck Millipore, Darmstadt, Germany) (1:100 in a dilution buffer with 2% BSA and 0.25% Triton-X 100) overnight at 4 °C in a humidified chamber. Reaction was detected with biotinylated secondary antibodies swine anti-rabbit IgG (1:300) (Dako, North Sydney, Australia) for 60 min, and streptavidin-HRP (1:700) (R & D systems, Minneapolis, MN, USA) for 60 min at room temperature. Sections were developed with DAB Plus chromogen (Dako) and counterstained with Hematoxylin [48 (link)]. Replacement of the primary antibody with 1% bovine serum albumin in phosphate-buffered saline (PBS) or normal rabbit IgG at the same concentration was used following the same protocol as a negative control. Images were taken and analysed as previously described [48 (link)].
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6

Western Blot Protein Analysis Protocol

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Cellular proteins were extracted with RIPA buffer (Nacalai Tesque, Inc., Kyoto, Japan) supplemented with protease inhibitor cocktail (Sigma), 100‐mmol·L−1 NaF, and 1 mol·L−1 Na3VO4, centrifuged at 15 000 × g for 15 min, and supernatants were collected. Equal amounts of total proteins were separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis under reducing conditions using 4–12% gradient gels and transferred onto an Immobilon membrane (Millipore, Bedford, MA, USA). After blocking using 5% nonfat milk in Tris‐buffered saline with 0.1% Tween 20 (TBS‐T), membranes were incubated overnight at 4 °C, with a primary antibody described above. Membranes were washed with TBS‐T and incubated with horseradish peroxidase‐conjugated secondary antibody, goat anti‐mouse IgG (#1706516; Bio‐Rad Laboratories Inc., Hercules, CA, USA, 1 : 5000), or swine anti‐rabbit IgG (P0217; Dako, Glostrup, Denmark, 1 : 5000) diluted in TBS‐T with 1% bovine serum albumin for 1 h at room temperature. The labeled proteins were visualized with a chemiluminescence reagent (PerkinElmer Life Science, Boston, MA, USA).
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7

Tissue Homogenization and Protein Analysis

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Each tissue was independently homogenized in a lysis buffer containing 50 mmol/L Tris-HCl, pH 7.5, 150 mmol/L NaCl, 1% Triton X-100 and a protease inhibitor cocktail (Nacalai Tesque, Kyoto, Japan) using a Polytron homogenizer (Kinematica, Lucerne, Switzerland) at 80% of the maximal speed. After being centrifuged twice at 10,500 Â g for 10 minutes at 4 C, the supernatant fluids were measured for protein concentrations using the BCA protein assay system (Pierce, Rockford, IL). The samples were then analyzed by 12.5% SDS-PAGE. Electrophoretic transfer of proteins from polyacrylamide gels to a polyvinylidenefluoride membrane (Immobilon-P; Millipore Co., Bedford, MA) was performed as described previously. 14 The sheets were soaked in phosphate-buffered saline containing 5% bovine serum albumin and then incubated overnight with anti-CTSD (dilution 1:1000) and further with swine antirabbit IgG (dilution 1:1000; Dako, Glostrup, Denmark). The membranes treated with Immobilon Western Chemiluminescent HRP Substrate (Millipore Co.) were observed using an LAS-3000 mini system (Fuji Photo Film, Tokyo, Japan).
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