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5 protocols using anti integrin α5

1

Immunoprecipitation of TM4SF5 Complexes

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SNU449 cells were transiently transfected with strep-tagged TM4SF5 11 (link) (or mock-transfected) for 24 h and then treated with Ab27 or Ab79 (10 µg/ml) for an additional 24 h. Cells were lysed in lysis buffer (20 mM HEPES, pH 7.4, 150 mM NaCl, 2 mM MgCl2, 2 mM CaCl2) containing 1% Brij58. Whole cell lysates (850 µg/condition) were immunoprecipitated with streptavidin beads (Thermo Fisher Scientific, Waltham, MA, USA) at 4ºC for 16 h. The protein complexes were washed twice with ice-cold lysis buffer and then twice with PBS. The immunoprecipitated proteins were eluted by boiling in SDS sample buffer and analyzed by immunoblotting with anti-Strep tag (IBA; Olivette, MO, USA), anti-integrin α2 (Chemicon, Temecula, CA, USA), anti-integrin α5 (BD Biosciences), and anti-CD44 (BioLegend; San Diego, CA, USA) antibodies.
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2

Analysis of Signaling Pathways in Cell Lysates

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Whole-cell lysates were prepared using RIPA buffer, as described previously15 (link), and analyzed using the following primary antibodies: anti-Sp1, anti-Sp3, anti-uPA, and anti-GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-myc (Upstate Biotechnology, Lake Placid, NY, USA); anti-phospho-c-Jun(S63), anti-c-Jun, anti-phospho-ATF-2(T71), anti-ATF-2, anti-phospho-JNK(T183/Y185), anti-JNK, anti-phospho-Akt, anti-Akt, anti-survivin, anti-bcl-2, anti-phospho-IKKα/β(S176/180), anti-phospho-IκBα(S32), anti-phospho-NF-κB p65(S536), anti-cleaved caspase-3, and anti-PARP (Cell Signaling Tech., Danvers, MA, USA); anti-integrin α5 (BD Biosciences, San Jose, CA, USA); and anti-TMPRSS4 (in-house)15 (link). Where indicated, cells were treated with 0.1~10 μM KRT185314 (link) or IMD-0354 (Sigma, St Louis, MO, USA), 20~50 μM oxaliplatin (Sigma), or 0.1% dimethyl sulfoxide (DMSO) for 24~48 h before lysate preparation.
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3

Whole-cell Lysates Preparation and Immunoblotting

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Whole-cell lysates were prepared using RIPA buffer as described previously [26 (link)] and analyzed using the following primary antibodies: anti-integrin α4, anti-SP1, and anti-GAPDH (Santa Cruz Biotechnology, Dallas, TX); anti-integrin α2 (Chemicon International, Temecula, CA); anti-myc (Upstate Biotechnology, Lake Placid, NY); anti-cyclin D2, anti-phospho-c-Jun(S63), anti-c-Jun, anti-phospho-AKT, anti-AKT, anti-survivin, anti-Bcl-2, anti-SLUG, anti-SOX2, anti-CD133, anti-ABCB1, and anti-KLF4 (Cell Signaling Technology, Danvers, MA); anti-BMI1 (Millipore, Temecula, CA), anti-integrin α5 and anti-E-cadherin (BD Biosciences, San Jose, CA); anti-vimentin and anti-flag (Sigma); anti-TWIST1 (Abcam, Cambridge, MA); and anti-TMPRSS4 (in-house) [26 (link)].
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4

Immunohistochemistry and Flow Cytometry Protocols

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We used the following primary antibodies: anti-FN (1:1,000, Millipore, Burlington MA USA), anti-α-SMA-Cy3 conjugated (1:500, Sigma-Aldrich, St. Louis, MO USA), anti-paxillin (1:300, BD Transduction, Spain), anti-keratin 6 (1:500, Covance, Spain), anti p-Smad2/3 (1:300, Thermo Fisher, Spain), anti-α5 integrin (1:100, Cell Signaling Technology, The Netherlands) and anti-Ki67 (1:200, Abcam, Cambridge, UK). For flow cytometry, we used anti-α5 integrin (1:200 BD Pharmingen, Spain) and anti β3 integrin (1:200 BD Bioscience, Spain). Secondary antibodies: anti-rabbit Alexa Fluor 488 (1:400 Thermo Fisher, Spain) and anti-mouse Alexa Fluor 647 (1:500, Invitrogen). To stain the cytoskeleton, we used Rhodamine Phalloidin (1:500 Thermo Fisher). To stain nuclei, we used either DAPI (1:10,000, Thermo Fisher) or Hoechst (1:10,000, Thermo Fisher).
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5

Western Blot Analysis of Focal Adhesion Proteins

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Western blot analysis was performed as described previously20 (link). The antibodies used are: anti-FAK (3285S, Cell Signaling), anti-phospho-FAK (3283, Cell Signaling), ant-Flag (F1804, Sigma), anti-β1 integrin (ab179471, Abcam), anti-α5 integrin (553319, BD PharmingenTM), anti-Gal-1 (AF1245, R&D Systems), anti-GAPDH (ab8245, Abcam) and anti-β actin (GTX109639, Gene Tex).
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