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5 protocols using gatan ultrascan 1000 camera

1

Fibril Characterization via Transmission Electron Microscopy

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Fibril solutions were buffer exchanged and diluted 20-fold in ultra-pure water prior to TEM grid preparation. Samples were deposited onto Formvar-coated copper TEM grids (200 mesh) (Electron Microscopy Sciences- Lot No. 150708, Hartfield, PA, USA) and were subsequently stained with 2% uranyl acetate (w/v) solutions by using the floating grid technique [63 ]. Grids were analyzed using a FEI Technai 12 electron microscope (FEI company, Hillsboro, OR, USA) operating at 120 kV. Representative images were captured in triplicate using a Gatan ultrascan 1000 camera (Pleasanton, CA, USA) and the processing was carried out in the Gatan digital micrograph software. The mean diameter of the fibrils was calculated by obtaining triplicate diameter measurements of at least five fibrils using ImageJ software [64 (link)].
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2

Biofuel Feedstock Pretreatment Microscopy

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Pretreated biomass samples were dehydrated by treating with increasing concentrations of acetone by increments of ~20 vol % and intermittently heated for 1 min in a Pelco microwave oven after each addition of acetone. After dehydration, the samples were infiltrated with Eponate 812 (EMS, Hatfield, PA) by incubating at room temperature for several hours to overnight in increasing concentrations of resin in increments ~20 vol % diluted in acetone until 100 % resin was reached, after which three complete resin exchanges were performed. The infiltrated samples were transferred to capsules and the resin polymerized in and oven at 60 °C overnight. Samples embedded in resin blocks were sectioned to ~250 nm with a Diatome diamond knife on a Leica EM UTC ultramicrotome (Leica, Wetzlar, Germany). Sections were collected on 0.5 % Formvar coated slot grids (SPI Supplies, West Chester, PA) and were post-stained for 2 min with 1 % aqueous KMnO4. Images were captured with a four mega-pixel Gatan UltraScan 1000 camera (Gatan, Pleasanton, CA) on a FEI Tecnai G2 20 Twin 200 kV LaB6 TEM (FEI, Hillsboro, OR) using SerialEM [40 (link)].
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Preparation and Imaging of LR White-embedded Sections

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LR White-embedded ultra-thin sections were collected on 0.35% Formvar-coated copper slot grids (from SPI Supplies in West Chester, PA, United States). Grids were post stained for 3 min with 2% aqueous uranyl acetate and 3 min with 1% KMnO4. Images were taken with a 4-megapixel Gatan UltraScan 1000 camera (from Gatan in Pleasanton, CA, United States) on a FEI Tecnai G2 20 Twin 200 kV LaB6 TEM (from FEI in Hillsboro, OR, United States) operating at 200 kV.
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4

Microscopic Analysis of Cell Clusters

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Samples were stained with 1% Toluidine Blue (Fishersci.com) before being mounted on microslides (Gold‐Seal, Fishersci.com). The number of single cells and clusters of 2–4, 5–10 and >10 cells were counted from micrographs obtained using an Olympus BX43 microscope with an Olympus DP26 camera. Proportions of each cluster were determined from greater than 1,000 cells from 20 micrographs from 3 replicate experiments for each genotype and treatment.
For electron microscopy, untreated and treated samples were infiltrated with Embed‐812 epoxy resin (Electron Microscopy Sciences, Hatfield, PA) for 24 h, spun down into a pellet in a 2‐mL vial and polymerized at 70 °C overnight. Semi‐thin Toluidine Blue‐stained sections were mounted on glass slides for light microscopy (500 nm thickness), then ultrathin sections (200 nm and 100 nm) were collected on 100‐mesh formvar‐coated copper grids, stained with 4% aqueous uranyl acetate, rinsed in water, and finally stained with lead citrate and rinsed. Images were captured with a four megapixel Gatan UltraScan 1000 camera (Gatan, Pleasanton, CA) on an FEI Tecnai G2 20 Twin 200 kV LaB6 TEM (FEI, Hillsboro, OR).
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5

Microwave Resin Embedding of Vascular Tissue

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Particles comprising vascular tissue were visually selected from milled native or milled and DA/5 mM Fe3+ pretreated corn stover samples under the anaerobic setup condition. The particles were processed via the microwave resin embedding process described previously [23 ]. Briefly, samples were first infiltrated with water, followed by dehydration with increasing concentrations of ethanol with intermittent microwave steps. Next, the samples were infiltrated with LR White (London Resin Company, Reading, United Kingdom) by incubating at room temperature for several hours (up to overnight) in increasing concentrations of resin diluted in ethanol. Microwave steps were performed each time the concentration was increased. The fully infiltrated samples were capsules and placed in a laboratory oven at 60 °C overnight to polymerize the resin. Ultra-thin (~60 nm) sections were cut using a Leica Ultramicrotome (Leica Microsystems GmbH, Wetzlar, Germany) and collected on 0.5% polyvinyl formvar coated copper slot grids (SPI Supplies, West Chester, PA, USA). Grids were individually stained for 30 s with 1% aqueous KMnO4. Images were taken with a four-megapixel Gatan UltraScan 1000 camera (Gatan, Pleasanton, CA, USA) on a FEI Tecnai G2 20 Twin 200 kV LaB6 TEM (FEI, Hillsboro, OR, USA) operated with an accelerating voltage of 200 kV.
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