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3 protocols using tianscript m ml 5

1

Quantitative Analysis of Cellular RNA Levels

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RNA was isolated from cultured cells by TRIzol (Invitrogen). For analysis of Pvt1 and c-Jun mRNA, cDNA was reverse transcribed from RNA using the PrimeScript RT kit (TaKaRa, Tokyo, Japan). qRT-PCR was performed using SYBR Premix Ex-Taq (TaKaRa) with the ABI Stepone instrument (Applied Biosystems, Santa Clara, CA, USA) in triplicate, following the manufacturers’ protocols. To analyze miR-214 expression, RNAs were reverse-transcribed using primers specific for miR-214 with TIANScript M-ML V (Tiangen, Beijing, China). miR-214 expression was examined by qRT-PCR. The reverse transcription reaction conditions were incubation at 42°C for 30 minutes, denaturation at 85°C for 5 minutes, and heat preservation at 4°C. The qRT-PCR conditions were incubation at 50°C for 2 minutes and incubation at 95°C for 10 minutes, followed by 40 cycles at 95°C for 15 seconds and 60°C for 1 minute. The results were calculated with the 2–ΔΔCT method with β-actin mRNA or U6 as an internal reference. Table 1 lists the primer sequences.
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2

Quantifying mRNA and miRNA Levels from Tissue Samples

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For measurement of mRNA levels, total RNA from tissue samples was isolated using RNAprep Pure Tissue kit (Tiangen, Beijing, China) according to the manufacturer’s instructions. Random-primed cDNAs were generated by reverse transcription of total RNA with TIANScript M-MLV (Tiangen). A real-time PCR analysis was performed with the ABI Prism 7000 Sequence Detection system (Applied Biosystems) using SYBR® Premix-Ex TagTM (Takara, Dalian, Chnia). GAPDH was used for an internal control. Primer sequences for these mRNAs were listed in Table S2.
Mature miRNAs from tissue samples, serum and exosomes were extracted using miRcute miRNA Isolation kit (Tiangen). Pre-miRNAs from tissue samples were extracted using RNAprep Pure Tissue kit (Tiangen). poly(A) modification and first-strand cDNA synthesis were performed with miRcute miRNA first-strand cDNA synthesis kit (Tiangen). qRT-PCR analysis for mature miRNA was conducted using miRcute miRNA qRCR detection kit (Tiangen). For measurement of miRNA or pre-miRNA levels in the tissue samples,18S rRNA was used as an internal control. The miRNA levels in serum and exosomes were determined using absolute quantitative real-time RT-PCR described previously40 (link). Primer sequences for these miRNAs were listed in Table S2.
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3

Quantitative Analysis of miRNA Expression

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TRIzol solution (Invitrogen) was used to extract or isolate total RNA form glioma tissues or cells. Reverse transcription was finished by using PrimeScript™ RT Master Mix (TaKaRa, Dalian, China). To detect the expression level of miRNA, the reverse transcription of miRNAs was carried out with TIANScript M‐MLV (Tiangen, Beijing, China). qRT‐PCR was conducted on a LightCycler 480 instrument (Roche, Basel, Switzerland) using SYBR Premix Ex Taq II (TaKaRa). The conditions for thermal cycle were shown as follows: 95°C for 30 seconds followed by 40 cycles at 95°C for 5 seconds and at 60°C for 30 seconds. The specific primers of genes were bought from Invitrogen. GAPDH and U6 were separately used as the internal control. The relative expression levels of genes were calculated by using the 2−ΔΔCt method.
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