The largest database of trusted experimental protocols

5 protocols using af1333

1

Analyzing Bone Protein Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tibias were minced and homogenized with RIPA lysis buffer and protease inhibitor cocktail (Beyotime) at 4 °C to obtain 1:9 (W/V) whole homogenate. The homogenates were centrifuged at 8000× g for 10 min under 4 °C to obtain the femoral proteins. Aliquots of protein extract were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride (PVDF) membrane, operating on a Bio-rad instrument (Hercules, CA, USA). The membrane was incubated with primary antibodies against GSK-3β (AG751, Beyotime), phospho-GSK-3β (Ser 9, AF1531, Beyotime), β–Catenin (AF0069, Beyotime), Runx2 (D1L7F, CST, Danvers, MA, USA), Nrf2 (AF7623, Beyotime), HO-1 (AF1333, Beyotime), and the loading control β–actin (2148, Abcam) or α/β–tubulin (2148S, CST). Horseradish peroxidase-conjugated secondary antibody (Beyotime) was used to enhance ECL chemiluminescence detection. The protein bands were scanned and analyzed by ImageJ software (NIH, Bethesda, MD, USA). Each protein band was normalized to its β–actin band, and the levels of phosphorylated proteins were normalized to the levels of their corresponding total proteins. The results were calculated as percentage change to the ND group.
+ Open protocol
+ Expand
2

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were lysed with RIPA lysis buffer (P0013B, Beyotime) on ice for 30 min. The supernatants of cells were harvested after centrifugation at 12,000 g for 10 min at 4°C. A BCA protein assay kit (P0012S, Beyotime) was used to determine the total protein concentration. Protein extracts were mixed with loading buffer and boiled at 95°C for 10 min. The boiled samples were loaded onto SDS-polyacrylamide gels followed by electrophoresis and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with TBS-tween containing 5% skim milk, inculcated with either RUNX2 (1:1,000 dilution, S12556, Cell Signaling Technology), BMP2 (1:1,000 dilution, AF0075, Beyotime), HMOX-1 (1:1,000 dilution, AF1333, Beyotime), BID (1:1,000 dilution, AF6306, Beyotime), IL-6 (1:1,000 dilution, AF7236, Beyotime), HIF-1α (1:1,000 dilution, CSB-PA002906, CUSABIO), PRKAA2 (1:2,000 dilution, CSB-PA805325LAO1HU, CUSABIO), β-actin (1:5,000 dilution, AF5003, Beyotime), or GAPDH (1:10,000 dilution, S2118, Cell Signaling Technology) antibodies overnight at 4°C. The membranes were washed and inculcated with HRP-labeled secondary antibody (1:5,000 dilution, ab205718, Abcam). Detection was done using clarity western ECL (WBKLS0100, Millipore). The images were acquired through the e-Blot Touch Imager and semiquantitative analyses were performed by the FIJI software.
+ Open protocol
+ Expand
3

Oxidative Stress Pathway Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sal B was purchased from MedChemExpress (Monmouth Junction, NJ, USA). Potassium chloride (KCl) was obtained from Sigma (St. Louis, MO, USA). Dihydroethidium (DHE) was from Life Technologies (Carlsbad, CA, USA). Protease inhibitor cocktail was from Sigma Chemicals (St. Louis, MO, USA). Antibodies against gp91phox (1 : 1000, sc-130543), Keap1 (1 : 500, sc-515432), and NQO1 (1 : 500, sc-32793) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA); Cleaved caspases-3 (1 : 500, ab49822) and Nrf2 (1 : 1000, ab92946) were from Abcam (Cambridge, UK); HO-1(1 : 1000, AF1333) and Histone H3 (1 : 500, AF7101) were from Beyotime Institute of Biotechnology (Shanghai, China); GAPDH (1 : 2000; #2118), Bax (1 : 1000, #14796), and Bcl-2 (1 : 1000, #3498) were from Cell Signaling Technology (Beverly, MA, USA).
+ Open protocol
+ Expand
4

Quantitative Western Blot Analysis of Stress Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total proteins were extracted by cold RIPA lysis buffer (50 mM Tris-HCl pH 7.8, 150 mM NaCl, 1% Triton X-100) containing protease inhibitors cocktail and phosphatase inhibitors cocktail (Biomake, Houston, TX, USA). The total protein concentration of each group was detected by BCA kit [55 (link)]. Proteins were separated by SDS-PAGE and transferred onto a polyvinylidene fluoride membrane (Millipore, Boston, MA, USA). The membrane was blocked with 5% nonfat milk at room temperature for 1 h. Additionally, then the membranes were washed three times with TBST and incubated overnight at 4 °C with primary antibodies against ATF3 (1:1000, 18665S, Cell Signal Technology, Danvers, MA, USA), HO1 (1:1000, AF1333, Beyotime, Shanghai, China), Nrf2 (1:1000, AF7623, Beyotime, Shanghai, China), Ubiquitin (1:1000, P4D1-A11, Millipore, MA, USA) and GAPDH (1:1000, sc-47724, Santa Cruz, CA, USA) and then washed three times with TBST. After incubation with the secondary antibodies (1:5000, 18665S, Cell Signal Technology, MA, USA), the protein bands were developed using a Beyo ECL Star Kit (Beyotime, Shanghai, China) and visualized on a Chemi Hi Sensitivity Imaging System (BioRad, Hercules, CA, USA).
+ Open protocol
+ Expand
5

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The RIPA buffer (CWBIO, China), containing protease and phosphatase inhibitors, was used for cell sample lysis. The protein concentration of the samples was determined using the BCA assay kit (Beyotime, China). Subsequently, protein samples (30 μg/sample) were separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis, transferred onto polyvinylidene fluoride membranes and blocked with 5% skim milk. Commercial antibodies were employed for protein immunoblot analysis, including DCTPP1 (1:1000, 16684‐1‐AP, Proteintech), PARP1 (1:2000, 13371‐1‐AP, Proteintech), Nrf2 (1:1000, AF7623, Beyotime), GCLC (1:1000, AF6969, Beyotime), HO‐1 (1:1000, AF1333, Beyotime) and GAPDH (1:20000, 10494‐1‐AP, Proteintech). The membrane was washed in TBST and subsequently incubated with the relevant secondary antibodies at room temperature for 1 h. The bands were then immersed in the working solution of ECL buffer (Beyotime, CN) for 1 min and exposed in a Chemiluminescence Imaging System with GeneTools software (Syngene, UK). GAPDH was used as the normalized endogenous reference. GAPDH served as an endogenous reference for normalization and the data was homogenized using the control group as the baseline.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!