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4 protocols using xl888

1

Antibodies and Inhibitors for Cancer Research

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Antibodies against HSP70 (#4872), CRAF (#9244), HSP90 (#4874), SKP2 (#2652), p-Akt (Ser473) (#4060), Akt (#9272), ERK1/2 (#9102), p-MEK1/2 (#9121), MEK1/2 (#9122), MEK1 (#9124) and p-MEK1 (#9127) were purchased from Cell Signalling Technology (Beverly, MA). Antibodies against p-ERK1/2 (sc-7383), BRAF (sc-166), CDC37 (sc-1617 and sc-13129) and GAPDH (sc-32233) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The antibodies against Caspase-3 (AAP-113) were from Enzo Life Sciences (Dural, NSW, Australia). Antibody against BRAFV600E (26039) was purchased from NewEast Biosciences (NewEast Biosciences, PA). The HSP90 inhibitors AUY922 and XL888, the MEK inhibitor AZD6244, the PI3K/Akt inhibitor LY294002 and the BRAF inhibitor PLX4720 were purchased from Selleckchem (Redfern, NSW, Australia).
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2

Comprehensive Signaling Pathway Analysis

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Antibodies used in this study were anti-B-RAF (D9T6S), anti-GFP, anti-HSP90, anti-p44/42 MAPK (ERK1/2), anti-phospho-p44/22 (ERK1/2) (Thr 202 /Tyr 204 ), anti-MEK1/2, anti-phospho-MEK1/2 (Ser 217/212 ), anti-AKT, anti-phospho-AKT (S473), anti-EGFR (D38B1), anti-phospho-EGFR (Tyr 1068 ) (D7A5) (all from Cell Signaling Technology), anti-RAF-B (F-7), anti-α-tubulin (Santa Cruz Biotechnology), anti-glyceraldehyde-3-phosphate dehydrogenase (Abcam), and anti-HA (3F10) (Roche Diagnostics). Belvarafenib (HM95573), dabrafenib, encorafenib, GDC-0879, lifirafenib (BGB-283), LY3009120, MLN2480, naporafenib (LXH254), sorafenib, TAK-632, trametinib, vemurafenib, and XL888 were purchased from SelleckChem. All inhibitors were dissolved in dimethyl sulfoxide (DMSO).
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3

Screening of HSP90 inhibitor compounds

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The following drugs were purchased from Selleck Chem: 17-AAG (Cat No: S1141), NMS-E973 (Cat No: S7282), Onalespib (Cat No: S1163), XL888 (Cat No: S7122), Alvespimycin (17-DMAG) HCl (Cat No: S1142), VER-49009 (Cat No: S7458), BIIB021 (Cat No: S1175), SNX-2112 (Cat No: S2639), and Anisomycin (S7409). Lysophosphatidic acid (LPA, L7260) was purchased from Sigma. All drugs were pre-arrayed into a 384-well source plate and serial dilutions were made in 100% DMSO. A fixed 100-nL volume was then transferred from the source plate to assay wells using a pin tool (Tecan). Screens were performed at 10 doses with two technical (on-plate) replicates. Each assay plate contained 16 DMSO-treated negative controls, 16 non-treated controls, and 16 Background (No Cells) controls.
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4

Tanespimycin-Induced Proteome Changes

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HeLa cells were seeded at a density of 5 × 106 cells into 150 mm culture dishes with 20 mL of SILAC DMEM medium containing either isotopically light L-lysine and L-arginine or isotopically heavy 13C615N2-L-lysine and 13C6-L-arginine (Silantes) and supplemented with 10% dialyzed FBS (Valley Biomedical Inc.) and 1 % pen./strep. (Fisher Scientific). Cells were treated with various concentrations (100, 250, 500, 1000 nM) Tanespimycin (17-N-allylamino-17-demethoxygeldanamycin [17-AAG] Cayman Chemicals), 300 nM XL888 (Selleckchem), 400 μM Novobiocin (Sigma) or 0.1% v/v dimethyl sulfoxide (DMSO) for 18 h before harvesting with 5 mL of phosphate buffered saline (PBS) containing 5 mM EDTA. Cells were washed with PBS and pelleted by centrifugation at 300 g for 3 min and suspended in 170 mM Na2HPO4 pH 8.0 for chemical cross-linking.
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