The largest database of trusted experimental protocols

7 protocols using ep300

1

Characterizing HSF2 Acetylation Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brain cortices or organoids, or cells (N2a, SHSY-5Y) were lysed 30 min in Lysis buffer A (25 mM Hepes pH 8, 100 mM NaCl, 5 mM EDTA, Triton X-100 0.5%, 1 mM VPA, 1 mM PMSF, protease inhibitors, phosphatase inhibitors [Roche]). After centrifugation (15 min, 12 000 g) and preclearing, cell lysates were subjected to immunoprecipitation overnight using an anti-mouse HSF2 (Santa-Cruz) and a non-relevant IgG (Sigma–Aldrich) as a negative control that were pre-incubated 1 h at RT with Protein G UltraLink Resin beads (53132, Pierce). Protein complexes were then washed 4 times in wash buffer (25 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, Triton X-100 0.1% Glycerol 10%, 1 mM VPA, 1 mM PMSF, protease inhibitors, phosphatase inhibitors [Roche]), and suspended in 2× Laemmli buffer. After boiling, the immunoprecipitates were resolved in 8% SDS-PAGE and immunoblots were performed using an anti-rabbit pan acetyl-Lysine, anti-mouse HSF2 (Santa-Cruz), EP300 (Santa-Cruz) and CBP (CST). The amount of HSF2 and CBP or EP300 proteins in the input samples were detected with anti-mouse HSF2 and anti-rabbit CBP (CST) or EP300 (Santa-Cruz) antibodies.
+ Open protocol
+ Expand
2

Characterizing HSF2 Acetylation Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brain cortices or organoids, or cells (N2a, SHSY-5Y) were lysed 30 min in Lysis buffer A (25 mM Hepes pH 8, 100 mM NaCl, 5 mM EDTA, Triton X-100 0.5%, 1 mM VPA, 1 mM PMSF, protease inhibitors, phosphatase inhibitors [Roche]). After centrifugation (15 min, 12 000 g) and preclearing, cell lysates were subjected to immunoprecipitation overnight using an anti-mouse HSF2 (Santa-Cruz) and a non-relevant IgG (Sigma–Aldrich) as a negative control that were pre-incubated 1 h at RT with Protein G UltraLink Resin beads (53132, Pierce). Protein complexes were then washed 4 times in wash buffer (25 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, Triton X-100 0.1% Glycerol 10%, 1 mM VPA, 1 mM PMSF, protease inhibitors, phosphatase inhibitors [Roche]), and suspended in 2× Laemmli buffer. After boiling, the immunoprecipitates were resolved in 8% SDS-PAGE and immunoblots were performed using an anti-rabbit pan acetyl-Lysine, anti-mouse HSF2 (Santa-Cruz), EP300 (Santa-Cruz) and CBP (CST). The amount of HSF2 and CBP or EP300 proteins in the input samples were detected with anti-mouse HSF2 and anti-rabbit CBP (CST) or EP300 (Santa-Cruz) antibodies.
+ Open protocol
+ Expand
3

Characterizing HSF2 Acetylation Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brain cortices or organoids, or cells (N2a, SHSY-5Y) were lysed 30 min in Lysis buffer A (25 mM Hepes pH 8, 100 mM NaCl, 5 mM EDTA, Triton X-100 0.5%, 1 mM VPA, 1 mM PMSF, protease inhibitors, phosphatase inhibitors [Roche]). After centrifugation (15 min, 12 000 g) and preclearing, cell lysates were subjected to immunoprecipitation overnight using an anti-mouse HSF2 (Santa-Cruz) and a non-relevant IgG (Sigma–Aldrich) as a negative control that were pre-incubated 1 h at RT with Protein G UltraLink Resin beads (53132, Pierce). Protein complexes were then washed 4 times in wash buffer (25 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, Triton X-100 0.1% Glycerol 10%, 1 mM VPA, 1 mM PMSF, protease inhibitors, phosphatase inhibitors [Roche]), and suspended in 2× Laemmli buffer. After boiling, the immunoprecipitates were resolved in 8% SDS-PAGE and immunoblots were performed using an anti-rabbit pan acetyl-Lysine, anti-mouse HSF2 (Santa-Cruz), EP300 (Santa-Cruz) and CBP (CST). The amount of HSF2 and CBP or EP300 proteins in the input samples were detected with anti-mouse HSF2 and anti-rabbit CBP (CST) or EP300 (Santa-Cruz) antibodies.
+ Open protocol
+ Expand
4

Whole Cell Protein and Histone Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole cell extracts were prepared by lysis in RIPA buffer + EDTA (Boston Bioproducts, Inc.; Ashland, MA) with protease inhibitor cocktail (Roche Life Sciences; Indianapolis, IN). Extracts were subjected to SDS-PAGE and Western analysis with MYC (Cell Signaling (Danvers, MA) #5605), IRF4 (Cell Signaling #4964 or #4948), GAPDH (Life Technologies AM4300), CBP (Santa Cruz (Dallas, TX) sc-369), EP300 (Santa Cruz sc-584), or β-actin (Life Technologies AM4302) primary antibodies. For histone analysis, extracts were prepared by sulfuric acid extraction of permeablized nuclei, and extracted histones were subjected to SDS-PAGE and Western analysis with H3K18ac (Cell Signaling #9675), H3K27ac (EMD Millipore (Billerica, MA) 07–360), or H4 (Abcam (Cambridge, MA) 31830). Blots were incubated with DyLight conjugated secondary antibodies, imaged and quantified with a Licor fluorescence imager (Licor, Inc.; Lincoln, NE), or with HRP- conjugated secondary antibodies for ECL visualization.
+ Open protocol
+ Expand
5

Chromatin Immunoprecipitation in Naive, GCB, and B-cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP was performed in 1% formaldehyde-fixed naïve B and GCB-cells, or a mature B-cell line, OCI-Ly1, as previously described (Ci et al., 2009 (link)), using the following antibodies: H3K4me3 (Abcam, catalogue no. ab8580), H3K4me2 (Abcam, ab32356), H3K27Ac (Abcam, ab4729), H3K27me3 (Millipore, 17-622), PU.1 (Santa Cruz, sc-352), EP300 (Santa Cruz, sc-585x), CTCF (Millipore, 07-729), RAD21 (Abcam, ab992), RNA polymerase II (Santa Cruz, sc-899). Quantitative ChIP was performed using SYBER Green-based QPCR and the primer sequences in Table S3.
+ Open protocol
+ Expand
6

Western Blot Analysis of Wnt/β-Catenin Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were collected and lysed in RIPA buffer (Beyotime) on ice. Total proteins were quantified with the BCA assay kit (Beyotime). Samples were separated using sodium dodecyl sulphate‐polyacrylamide gels and then transferred to polyvinylidene fluoride membrane (Merck Millipore, Darmstadt, Germany) by standard procedures. The membranes were incubated with the relevant primary antibody overnight at 4°C. The protein labels were detected by enhanced chemiluminescence (ECL) solution (Beyotime). The primary antibodies included SCD1 (1:1000; Abcam, Cambridge, MA, USA), Wnt3a (1:2000; Abcam), β‐catenin (1:1000; Abcam), c‐Myc (1:1000; Proteintech, Wuhan, China), TCF7 (1:500; Proteintech), LEF1 (1:1000; Proteintech), EP300 (1:500; Santa Cruz, CA, USA) and GAPDH (1:1000; Abcam).
+ Open protocol
+ Expand
7

ChIP-seq Protocol for Transcription Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP experiments were conducted as previously described (23 (link)). Briefly, TSCs were fixed with 1% formaldehyde for 7 min at room temperature, and then glycine (final 125 mM) was added to quench formaldehyde (5 min). The fixed cells were sonicated using a Bioruptor (Diagenode) with a setting of 30 s on and 1 min off for 10 min (total of three times), and the sheared chromatins that have an average of 250 bp DNA fragments were utilized for immunoprecipitation using 10 μg of a native antibody. The antibodies used include EP300 (Santa Cruz, sc-585), FOS (Santa Cruz, sc-7202X), GATA2 (Santa Cruz, sc-9008X), MAFK (Santa Cruz, sc-477X), TEAD4 (Abcam, ab58310), TFAP2C (Santa Cruz, sc-8977) and H3K27ac (Active Motif, 39133). Enriched ChIP materials were used to generate next-generation sequencing libraries using an NEB ChIP-seq library preparation kit (NEB, E7370L). ChIP-seq libraries were sequenced using an Illumina HiSeq 2500 machine.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!