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7 protocols using fetuin from fetal bovine serum

1

Protein Purification from Biological Sources

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Fetuin from fetal bovine serum, avidin from chicken egg white, and human serum IgG were purchased from Sigma Aldrich (St. Louis, MO). Sequencing grade trypsin was obtained from Promega (Madison, WI). HPLC grade acetonitrile and methanol, ammonium bicarbonate, urea, guanidine hydrochloride (GdnHCl), dithiothreitol (DTT), iodoacetamide (IAM), and formic acid were purchased from Sigma Aldrich (St. Louis, MO). All the reagents were of analytical grade or better and were used without further purification.
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2

Glycoprotein Enrichment and Analysis

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Fetuin from fetal bovine serum, concanavalin A (ConA), wheat germ agglutinin(WGA), Ricinuscommunis agglutinin (RCA120), iodoacetamide (IAA), N-acetyl-D-glucosamine, D-lactose, methyl α-D-mannopyranoside and manganese dichloride were obtained from Sigma-Aldrich (St. Louis, MO). Tris base, urea, sodium chloride, human serum and calcium chloride were obtained from Fisher Scientific (Pittsburgh, PA). C18 OMIX tips were obtained from Agilent (Santa Clara, CA). Dithiothreitol (DTT) and sequencing grade trypsin were supplied from Promega (Madison, WI). Hydrophilic interaction chromatography material was obtained from PolyLC (Columbia, MD).
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3

Sialylglycopeptide Analysis via Mass Spectrometry

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Sialylglycopeptide (SGP) was purchased from Fushimi Pharmaceutical Co., Ltd. (Marugame, Kagawa, Japan). Spin columns (snap cap), AminoLink resin, aminoxyTMTzero, and Zebra desalting columns were purchased from Pierce (Thermo Fisher Scientific Inc.; Rockford, IL); Carbograph was purchased from Grace (Deerfield, IL). Peptide-N-glycosidase F (PNGase F), denaturing buffer, and reaction buffer G7 were from New England BioLabs (Ipswich, MA). F12K (500 mL), FBS (50 mL), NEAA (5 mL), L-glutamine (5 mL), and Blasticidin are purchased from Life Technologies (Frederick, MD). Fetuin from fetal bovine serum, p-Toluidine (pT), 2,5-dihydroxybenzoic acid (DHB), and N,N-dimethylaniline (DMA) were purchased from Sigma-Aldrich (St. Louis, MO); μ-Focus MALDI plate and its holder were form Hudson Surface Technology (Forte Lee, NJ); Axima Resonance MALDI QIT-TOF mass spectrometry was from Shimadzu Biotech (Columbia, MD). Human sera were collected from healthy men with the approval of the Institutional Review Board of Johns Hopkins University and pooled for use. Experiments were carried out in accordance with the IRB approved guidelines; all experimental protocols were approved by the IRB of Johns Hopkins University; informed consent was obtained from all subjects. All other chemicals were purchased from Sigma unless specified otherwise.
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4

Glycan Enrichment and Analysis

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HPLC-grade acetonitrile (ACN), methanol (MeOH),
acetone, and trifluoroacetic acid (TFA) were purchased from VWR Chemicals.
Porcine gastric mucins (PGM) type III, bovine submaxillary mucins
(BSM) Type I-S, fetuin from fetal bovine serum, dextran Mw 1000, dimethylformamide (DMF), dimethyl sulfoxide (DMSO),
ammonium acetate, and Discovery Glycan SPE tubes were obtained from
Sigma-Aldrich. Procainamide hydrochloride and Hypersep Hypercarb SPE
tubes (50 mg) were purchased from Thermo Fisher Scientific. Sodium
cyanoborohydride was obtained from abcr GmbH (Germany). Human milk
fat globule was obtained from AMMEVA GmbH (Germany).
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5

Glycoprotein Analysis via Mass Spectrometry

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Carbon nanoparticles (particle size less than 100 nm and specific surface area higher than 100 m2/g), ribonuclease B (RNase B) from bovine pancreas, fetuin from fetal bovine serum, human alpha-1 acid glycoprotein (AGP), human serum from human male AB plasma, 2,5dihydroxybenzoic acid (DHB), and iodomethane were purchased from Sigma-Aldrich (St. Louis, MO). Microspin columns were purchased from Harvard Apparatus (Holliston, MA) and PNGase F with 10×G7 reaction buffer (0.5 M sodium phosphate) was obtained from New England Biolabs (Ipswich, MA). HPLC grade ethanol, acetonitrile (ACN), and water were used for sample preparation and were purchased from Sigma-Aldrich (St. Louis, MO).
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6

Synthesis of Glycopolymer Probes for Lectin Binding

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Materials. Triethylamine (TEA, 99%), trimethylolethane (98%), 1-ethyl-3-(3-dimethyl aminopropyl)carbodiimide hydrochloride (EDC•HCl, 98%), 4-methoxyphenol (99%), acryloyl chloride (95%), propargyl alcohol (98%), lithium bromide (LiBr, 99%) and N,Ndimethylacrylamide (DMA, 99%) were purchased from Tokyo Chemical Industry (Tokyo, Japan). 4-Dimethylaminopyridine (DMAP, 99%), 2,2'-azobis[2-(2-imidazolin-2-yl)propane] dihydrochloride (AIPD, 98%) and formic acid (99%) were purchased from Wako Pure Chemical Industries (Osaka, Japan). Diethylether (Et2O), N,N-dimethylformamide (DMF), copper(II) sulfate (CuSO4, 97.5%), and sodium L-ascorbate (98%) were purchased from Kanto Chemical (Tokyo, Japan). Acetonitrile (MeCN) and fetuin from fetal bovine serum were purchased from Sigma Aldrich (St. Louis, USA). Blood cell suspension from a chicken was purchased from Nippon Bio-test Laboratory Inc (Saitama, Japan). 2-{[(Butylsulfanyl)carbonothioyl]sulfanyl}propanoic acid (BTPA), 36 6'-sialyllactose azide (6'-SALac azide), 37 and trifunctional RAFT agent 35 were prepared according to previous papers. Commercial monomers including the radical inhibitor were purified by passing through an alumina column prior to use.
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7

Influenza Neuraminidase Inhibition Assays

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Before performing assays, A/Shanghai/2/2013 (H7N9)-PR8-IDCDC-RG32A virus was titered to determine the optimum dilution. An NA inhibition assay with a small substrate was performed with the NA-Fluor Influenza Neuraminidase Assay kit (Thermo Fisher Scientific) according to protocol. For ELLA NI assays, 96-well ELISA plates were coated with 100 μL of 25 μg/mL of fetuin from fetal bovine serum (Sigma-Aldrich) diluted in 0.1 M PBS and incubated at overnight 4°C. 50 μL of three-fold serial dilutions of each antibody starting at a molar concentration of 66.7 nM (10 μg/mL) in PBS was added to 50 μL of pre-optimized virus dilution in PBS containing 0.9 mM CaCl2, 0.5 mM MgCl2, 1% BSA and 0.5% Tween. The fetuin-coated plates were washed, and the mAb-virus mixture was added to the plates and incubated for two h at 37°C. The plates were washed with PBST, and 100 μL of HRP-conjugated lectin from Arachis hypogaea (Sigma-Aldrich) at 5 μg/ mL was added to the plates and incubated for 1.5 h at RT. The plates were washed and 100 μL of TMB substrate was added to the plates, and the reaction was stopped with 1N HCl. The optical density values were measured at 450 nm wavelength on a BioTek plate reader. In both assays, each dilution was performed in triplicate, and the IC50 values were calculated in Prism software (GraphPad) using non-linear regression analysis.
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