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Peqgold rnapure reagent

Manufactured by Avantor
Sourced in Germany

PeqGold RNApure™ is a reagent used for the isolation and purification of total RNA from various biological samples. It is a single-step method that utilizes a proprietary guanidinium-based solution to lyse cells and denature RNases, allowing for the efficient extraction of high-quality RNA.

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5 protocols using peqgold rnapure reagent

1

Mononuclear Cell Isolation from Blood and Bone Marrow

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Immediately prior to surgery, a blood sample was drawn from a central venous line into a lithium heparin monovette (Sarstedt, Nümbrecht, Germany). The bone marrow was punctured at the right iliac crest and 10 mL of bone marrow blood were taken and drawn into a lithium heparin monovette as well. All samples were kept at room temperature (18–25 °C) and were further processed within 0.5–2 h. Separation of the mononuclear cell fraction was performed by centrifugation through a Ficoll-Hypaque density cushion (GE Healthcare, Freiburg, Germany). Mononuclear cell fractions were then isolated, washed in phosphate buffer saline (PBS) and cells were counted in a Neubauer chamber. For RNA preparation, cells were lyzed in PeqGold RNApure™ reagent (PeqLab, Erlangen, Germany) and total RNA was isolated according to the manufacturer’s protocol.
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2

Macrophage Total RNA Isolation and qPCR

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Total RNA from macrophages was isolated using PeqGOLD RNAPure reagent (PeqLab Biotechnologie, Erlangen, Germany) and quantified using the NanoDrop spectrophotometer (NanoDrop, Wilmington, DE, USA). Total RNA (1 μg) was transcribed with the Maxima First Strand cDNA Synthesis Kit (Thermo Fisher Scientific). Quantitative real-time PCR was performed using iQ SYBR green Supermix (Bio-Rad Laboratories, Munich, Germany) and the Bio-Rad CFX96 system. Primer sequences for quantitative PCR can be obtained upon request. β2 microglobulin was used as an endogenous control for human macrophages.
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3

Quantitative PCR Analysis of RNA Expression

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RNA was extracted using peqGold RNAPure reagent (Peqlab). Total RNA (1 µg) was transcribed using the Maxima first-strand cDNA synthesis kit (Fermentas). qPCR was performed using the MyIQ real-time PCR system (BioRad) and Absolute Blue qPCR SYBR green fluorescein mix (Thermo Fisher). qPCR results were quantified using the Bio-Rad CFX Manager (version 3.1) software program from Bio-Rad, with 18 S mRNA expression as an internal housekeeping gene control for human samples and Tbp for murine samples. All primers were bought from Biomers, except the human LCN-2 primer, which was bought from Qiagen. Changes were determined relative to the respective expression in naïve control MΦ (ctrl).
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4

Quantification of PR1 Expression in Leaves

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Leaf samples were harvested after infiltration of leaves with Psph or with the control, the infiltrated areas with MgCl 2 . Total RNA was extracted with PEQ Gold RNAPure ® reagent (PEQ LAB, Erlangen, Germany) according to the manufacturer's instructions. The RNA obtained was separated on 1.5% agarose gels containing 5.5% formaldehyde, and blotted into nylon membranes. The nucleic acids bound to the membrane were cross-linked by UV-irradiation for 2 min. The expression of Pathogenesis related protein 1 (PR1) provides a marker for NO-elicited production of the defence hormone salicylic acid (Mur et al., 2000 (Mur et al., , 2013b)) . PR1 probes were labelled to high specific activity using the Random Primer DNA labelling system with 40 µCi [α-32 P] dCTP (ICN Biomedicals, Eschwege, Germany) according to the supplier's instructions. Hybridisation was performed at 65 °C for 15 h in 1% BSA, 1 mm EDTA, and 0.5 m Na 2 HPO 4 . The membrane was washed with 2× saline sodium citrate (SSC), 0.1% SDS at 65 °C for 30 min, and afterwards with 0.2× SSC, 0.1% SDS for 15 min at 65 °C prior to autoradiography. The air-dried membrane was exposed to Kodak X-omat DS film (Stuttgart, Germany) with an intensifying screen at -80 °C and the film was developed after appropriate time intervals.
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5

Isolation and Characterization of Intestinal Macrophages

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Small intestinal adenomas were isolated from 120 days old APC min mice. The tissue was cut into small pieces and digested with Collagenase C and DNase. For further disruption, it was pulled through 18G and 22G needles. Cells were collected through a 70 µm cell strainer and incubated in serum-containing buffer to avoid unspecific antibody binding. In the next step, cells were labeled with biotinylated anti-F4/80 antibody (BioLegend) before magnetic Streptavidin MicroBeads (Miltenyi, Bergisch Gladbach, Germany) were added. Thereafter, F4/80-positive cells were selected by magnetic separation using LS columns (Miltenyi, Bergisch Gladbach, Germany) and finally dissolved in PeqGold RNA Pure reagent (Peqlab, Erlangen, Germany) for RNA isolation.
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