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6 protocols using fugene six transfection reagent

1

Lentiviral transduction of hippocampal neurons

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Lentiviruses were produced in HEK293T cells (catalog number CRL-1573; ATCC, Manassas, VA, US) by contransfection of pFUGW transfer vectors and three packaging plasmids (pCMV-VSV-G, pMDLg/pRRE, pRSV-Rev) using Fugene six transfection reagent (catalog number E2692; Promega, Madison, WI, US). The supernatants of the cultures were collected 72 hr after the transfection and clarified by centrifugation (2000 rpm 15 min), and subsequently used for infection of DIV four hippocampal neurons. All experiments were performed on 16–20 DIV cultures when synapses were mature and lentiviral expression of constructs of interest was optimal (Mozhayeva et al., 2002 (link); Deák et al., 2006 (link)). All experiments were performed following protocols approved by the UT Southwestern Institutional Animal Care and Use Committee.
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2

Quantitative Fusion Assay for CCHFV

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Huh7 ‘donor’ cells (2.5x105 cells/well seeded in six-well tissue culture dishes 24 hr prior to transfection) were co-transfected using FuGENE six transfection reagent (Promega) with 3 μg of pT7HB2.7- wt or mutated glycoproteins and 50 ng of pLTR-luc reporter plasmid. For a positive control, cells were co-transfected with 3 μg of either pCAGGS-GP/wt-M, expressing CCHFV GPs, or 1 μg of phCMV-VSV-G and with 50 ng of the pLTR-luc plasmid. For negative controls, cells were co-transfected with 2 μg of an empty phCMV plasmid and 50 ng of the pLTR-luc plasmid. 12 hr later, transfected cells were detached with Versene (0.53 mM ethylenediaminetetraacetic acid (EDTA); Gibco), counted, and reseeded at the same concentration (105 cells/well) in 12-well plates. Huh7-tat or Huh7-NTCP-tat indicator cells, detached with EDTA and washed, were then added to the transfected cells (3x105 cells per well). After 24 hr of cocultivation, the cells were washed with phosphate-buffered saline (PBS), incubated for 3 min in fusion buffer (130 mM NaCl, 15 mM sodium citrate, 10 mM MES [2-(N-morpholino)ethanesulfonic acid], 5 mM HEPES) at pH 4, pH 5, or pH 7, and then washed three times with normal medium. The luciferase activity was measured 24 hr later using a luciferase assay kit according to the manufacturer’s instructions (Promega).
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3

Culturing and Transfecting Drosophila S2 Cells

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Drosophila S2 cells (S2- DGRC) were obtained directly from the Drosophila Genomics Resource Center (DGRC) and regularly confirmed to be free of contamination (e.g. mycoplasma) through PCR-based tests as recommended by the NIH. The S2 cells were cultured in Drosophila Schneider's medium supplemented with 10% of fetal bovine serum (Omega Scientific) and 1% Penicillin-Streptomycin-Glutamine (Thermo Fisher) at 25°C in a humidified incubator. Transfection was performed with FuGENE six transfection reagent (Promega). Expression constructs of GFP, mCherry, HhN, Hh, Ihog, and Ihog-YFP used in Drosophila cell culture were cloned into pAcSV plasmid as previously described (Wu et al., 2019 (link)).
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4

Producing and Characterizing Hepatitis Virus

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Huh7 cells were seeded in 10 cm plates at a density of 106 cells per plate and were transfected with a mixture of 2.5 µg of pSVLD3 plasmid and 10 µg of plasmid allowing the expression of surface envelope glycoproteins of VSV or HBV using FuGENE six transfection reagent (Promega), as described previously (Perez-Vargas et al., 2019 (link)). Transfected cells were grown for up to 9 days in primary hepatocyte maintenance medium containing 2% DMSO to slow cell growth.
The supernatants of virus producer cells were filtrated through 0.45-nm-pore filters and were analyzed by quantitative reverse transcription PCR (RTqPCR) for detection of HDV RNA, using the primers described below. These supernatants were also used for infection experiments in Huh7-NTCP cells or PDI-down-regulated Huh7-NTCP cells, which were seeded in 48-well plates at a density of 1.5x104 cells per well. Infected cells were cultured in primary hepatocyte maintenance medium containing 2% DMSO following infection. RTqPCR assays were used to assess infectivity of viral particles at 7 days post-infection.
For inhibition assays, drugs were incubated with cells for 2 hr at 37°C before virus addition or at different times post-infection and the infectivity was assessed 7 days post-infection by RT-qPCR.
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5

Generating Calcium Channel Constructs for Functional Studies

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The cDNAs used were Cav1.4 (GenBank: A930034B14), β2a (GenBank: NM_053851), β2X13 (GenBank: KJ789960), and α2δ−4 (GenBank: NM_172364) in pcDNA3.1 (Lee et al., 2015 (link)). To create the Cav1.4 cDNA with the G369i mutation, a codon insertion corresponding to the glycine insertion at residue G369 was generated with the HiFi DNA Assembly Cloning System (New England Biolabs) using Cav1.4 cDNA as the PCR template and the primers a1FbegNotF: 5'-TATATGCGGCCGCCCACCATGGATTAC-3’, Fr1G369insR: 5'-CTTAGGACACCTCCAAGCACAAGGTTGAGG-3’, Fr2G369insF: 5'-TTGGAGGTGTCCTAAGCGGGGAGTTC-3’, a1FBSrGIr: 5'-TTTAGGCAGCGTGTACAGCTAGCCATGGTCC-3’. All constructs were verified by DNA sequencing before use. Human embryonic kidney 293 T (HEK293T) cells (American Type Culture Collection, Manassas, Virginia) were cultured in Dulbecco’s Modified Eagle’s Medium (Thermo Fisher Scientific, Waltham, MA) with 10% FBS (VWR) at 37°C in 5% CO2. At 70–80% confluence, the cells were co-transfected with cDNAs encoding mouse Cav1.4 (1.8 μg) β2X13 (0.6 μg), α2δ−4 (0.6 μg), and enhanced GFP in pEGFP-C1 (0.1 μg) using FuGENE six transfection reagent (Promega, Madison, WI) according to the manufacturer’s protocol. Cells treated with the transfection mixture were incubated at 37°C for 24 hr. Cells were then incubated at 30°C for an additional 24 hr before beginning experiments.
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6

Examining Alpha-Synuclein Inclusion Formation

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Human neuroglioma cells (H4) were maintained in Opti-MEM I Reduced Serum Medium (Life Technologies-Gibco) supplemented with 10% fetal bovine serum Gold (FBS) (PAA, Cölbe, Germany) at 37°C in an atmosphere of 5% CO2. The cells were plated in 12-well plates (Costar, Corning, New York) 24 h before transfection. H4 cells were transfected with FuGENE® six Transfection Reagent (Promega, Madison, WI) according to the manufacturer’s instructions with equal amounts of plasmids of SynT and synphilin-1 as previously described (McLean et al., 2001 (link); Lázaro et al., 2014 (link)). Twenty-four hours after the transfections, the cells were treated with K84s or K102s peptides at a concentration of 1 μM. 2% Ethanol was used as vehicle control. After 24 h, the cells were subjected to immunocytochemistry to examine αSyn inclusion formation.
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