The largest database of trusted experimental protocols

Origin 5

Manufactured by OriginLab
Sourced in United States

Origin 5.0 is a data analysis and graphing software. It provides tools for data manipulation, visualization, and report generation. The software supports a variety of data formats and offers a range of plotting options.

Automatically generated - may contain errors

9 protocols using origin 5

1

Enzyme Kinetics Analysis with Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Initial velocity data were analyzed first with use of Origin 5.0 (OriginLab Corp., Northampton, MA 01060). Modeling of inhibitor effects was evaluated with Origin 2017. With pNPP as substrate, the initial velocity was estimated from a least-squares fit to the linear region within the first 20 s of progress curves and within the first 40 seconds with DADEpYLIPQQG as substrate. For each data set, KM and Vmax were estimated from hyperbolic fits of the initial velocity data in the absence of chelate inhibitors. Competitive, uncompetitive, and noncompetitive models of inhibition were then evaluated on the basis of hyperbolic fits to the full data set with KM held constant, and KI and Vmax allowed to vary. Double reciprocal plots of the data were then constructed with use of the parameters generated from the hyperbolic fits. Final model interpretation was determined qualitatively by the fit of hyperbolic and Lineweaver-Burk plots, and quantitatively on the basis of the χ2 value. In each case the initial velocity data were evaluated by Dixon [27 (link)] or Cornish-Bowden [28 (link)] plots to confirm the type of inhibition and the value of KI.
+ Open protocol
+ Expand
2

Thermodynamic Characterization of PPD-CK-MM Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
The thermodynamic parameters for the binding of PPD and recombinant human CK-MM (Sigma) were determined by ITC (Macrocal iTC200; Malvern, USA) [26] (link). The cell and syringe were filled with 50 μM CK-MM in phosphate buffer saline (PBS) buffer containing 5% dimethyl sulfoxide (DMSO) and 500 μM PPD in PBS buffer containing 5% DMSO, respectively. Each experiment consisted of a single 2 μL injection of PPD solution into the CK-MM solution at room temperature. An equal volume of vehicle was used as the negative control of injection. Data analysis was performed with the software package Origin 5.0, OriginLab, Northampton, USA. The integrated heats generated in the experiments were fitted assuming a single-site binding model.
+ Open protocol
+ Expand
3

Evaluation of Tooth-Adhesive-Bracket Bond Strength

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mean values of the shear bond strength of the tooth-adhesive-bracket complex and the mean values of enamel roughness were compared with the variance analysis and post hoc tests (multiple comparisons using the Tukey’s test). The statistical analysis was conducted using Origin 5.0 software (OriginLab, Northampton, MA, USA). Values below p = 0.05 were considered to be statistically significant.
+ Open protocol
+ Expand
4

Non-parametric Analysis of Experimental Data

Check if the same lab product or an alternative is used in the 5 most similar protocols
All data were tested for normality of distribution (Shapiro-Wilk test) and, based on the results of this test, analyzed using non-parametric repeated measures Friedman tests followed by Dunn's multiple comparisons testing. P < 0.05 was considered to indicate a statistically significant difference. Statistical analysis was conducted using Origin 5.0 (OriginLab Corporation, Northampton, MA, USA) and Prizm 5.0. (GraphPad Software, Inc., La Jolla, CA, USA) graph and statistical software. Values are expressed as the mean ± standard error (SE).
+ Open protocol
+ Expand
5

Intracellular Calcium Imaging and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Intracellular Ca2+ changes in individual cells were monitored as changes in fluo-4 fluorescence. Fluorometric signals were expressed as relative fluorescence changes: ΔF/F0 = (F-F0)/F0, where F0 denotes the baseline fluorescence level. The magnitudes of the Ca2+ changes from 5 s to 25 s after stimulus onset were measured and averaged. The data are expressed as the mean ± S.E. of the ΔF/F0 value. Half-maximal effective concentration (EC50) values were calculated from individual concentration-response data using the curving-fitting routines of Origin 5.0 (OriginLab, Northampton, MA, USA).
+ Open protocol
+ Expand
6

Statistical Analysis of In Vitro Experiments

Check if the same lab product or an alternative is used in the 5 most similar protocols
Statistical analysis was performed using Origin50 (OriginLab, MA) or SigmaPlot (SPSS Science, Chicago, IL) software. For each in vitro experiment, at least three independent experiments were performed. All data was recorded and expressed as means ± SE. The differences between two groups were analyzed using the unpaired Student’s t-test. The data from the nude mice tumor xnenograft experiment was analyzed using Wilcoxon Rank-Sum Test. All statistical tests were two-sided and a value of P < 0.05 was considered significant (*).
+ Open protocol
+ Expand
7

Metabolism and Microbial Diversity Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Statistical analyzes and graphs of metabolism were performed in Origin 5.0 (www.OriginLab.com). For metabarcoding diversity based on Operational Taxonomic Units (OTUs) were done in STAMP [42] , the bar plot visualization was constructed with a relative abundance of the genus or phyla level > 0.05% of abundance count table and rest summarized in others. Venn diagram and metagenomic analysis were performed with Rstudio software [43] .
+ Open protocol
+ Expand
8

Opiate Receptor Binding and Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro binding, [35S]GTPγS stimulation, and β-arrestin-2 coupling experiments were analyzed using Origin 5.0 software (OriginLab), with sigmoidal fitting to determine parameters of half-maximal concentrations and maximal intrinsic activity. In the case of binding experiments, sigmoidal IC50 determinations were converted to Ki values using the Cheng-Prusoff equation (Yung-Chi and Prusoff, 1973). The Kd values used were obtained from saturation binding analyses for [3H]U69,593, [3H]DAMGO, and [3H]DPDPE for the respective KOR, MOR, and DOR cell lines, using Scatchard analysis. For intrinsic activity calculations, values were normalized to that obtained with concurrent reference ligand stimulation. The reference ligand used for all in vitro assays was U69,593. All in vitro determinations were conducted in a minimum of 3 separate experiments In vivo rotarod and prolactin experiments were analyzed using Statistica 13.0 statistical software (Dell Statistica). For rotarod experiments, 2-way ANOVAs with repeated measures (condition/dose x time, with repeated measures on time) were used to examine effects and/or interactions of condition/dose and time. For prolactin experiments, 1-way ANOVAs were used to examine effect of condition. In both cases, Newman-Keuls posthoc tests were utilized to examine significant differences.
+ Open protocol
+ Expand
9

Quantification of miRNA and mRNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was prepared using TRIzol® reagent (Invitrogen). For miRNA quantification, cDNA was synthesized with specific miRNA reverse transcriptase primers using the TaqMan microRNA Reverse Transcription kit (Applied Biosystems). For mRNA quantification, cDNA was reversely transcribed at 37°C for 15 min, and 95°C for 10 min using the Moloney murine leukemia virus (M-MLV) reverse transcriptase (Toyobo Life Science), according to the manufacturer's protocol. RNA and cDNA samples were stored at −80°C until use. The qPCR analysis was performed on an Exicyler 96 sequence detection system (Bioneer Corporation). The final 50 µl reaction mixture contained 25 µl SYBR-Green PCR Master Mix (Toyobo), 2 µl primer mix (5 µM) and 10 ng cDNA. Thermocycling was carried out as follows: 95°C for 2 min for denaturation; followed by 40 cycles of 94°C for 15 sec, 55°C for 30 sec for amplification; and 72°C for 30 sec for termination. The standard curve was plotted using Origin 5.0 software (Originlab Corporation). The relative expression of miRNA was calculated using the 2−ΔΔCq method (17 (link)) and normalized to glyceraldehyde 3-phosphate dehydrogenase (GAPDH). The following primers for GAPDH were synthesized by Beijing Dingguo Changsheng Biotechnology Co., Ltd.: Sense, 5′-CCATGGAGAAGGCTGGGG-3′ and antisense, 5′-CAAAGTTGTCATGGATGACC-3′.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!