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Sieve v2

Manufactured by Thermo Fisher Scientific
Sourced in United States

SIEVE v2.2 is a versatile laboratory equipment designed for sieve analysis. It is used to determine the particle size distribution of various solid materials, such as powders, granules, and aggregates. The device employs a mechanical shaking mechanism to separate the sample into different size fractions, which are then weighed to provide detailed information about the particle size composition.

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4 protocols using sieve v2

1

UHPLC-Orbitrap MS Analysis of Melatonin

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Analysis of MLT was performed on an UltiMate 3000 UHPLC System (Thermo-Dionex) equipped with LTQ Orbitrap MS (Thermo-Fisher Scientific, Waltham, MA, USA). The separation of MLT was achieved on an Acquity UPLC BEH phenyl column (2.1 mm × 100 mm, 1.7 μm, Waters) with a flowrate of 0.2 mL/min. The column oven temperature was set at 35°C. Water (solvent A) and acetonitrile (solvent B) were employed as mobile phase. The gradient was started at an initial composition of 95% A and 5% B, 2–20 min, 40% B, then 23 min linear gradient to 90% B, held for 5 min. A return to the initial conditions was accomplished by a 2 min gradient to 95% B, it was held for 10 min, total chromatographic run time was 40 min.
The MS was set to acquire full MS scan in positive ion mode with a mass range of m/z 150–300 at a resolution of 120,000. Ion source conditions were as follows: heater temperature, 300°C; capillary temperature, 350°C; sheath gas flow, 35 arbitrary; auxiliary gas flow, 15 arbitrary; spray voltage, 3.5 kV; S-lens RF level, 60%. Data acquisition and analysis was performed using Xcalibur v3.0.63 (Thermo Fisher Scientific) and SIEVE v2.2 (ThermoFisher Scientific, USA).
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2

Metabolomics Profiling using SIEVE

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The raw data were aligned and extracted using the SIEVE v2.2 application software from Thermo Fisher Scientific. The experimental target was metabolomics and the minimum intensity for the base peak was 1,000,000. The frames and threshold values were defined as 481,351 for the positive mode and 674,992 for the negative mode. SIMCA-P 13.0.3 software from MKS Umetrics (Umeå, Sweden) was then used to obtain OPLS-DA. The S-plots were also utilized for finding different candidates between blank and test groups.
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3

Quantitative Analysis of Plasma Lipids

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Relative quantitation of selected lipids in the human plasma pools was done using either TraceFinder v. 4.1 or SIEVE v. 2.1 (Thermo Fisher Scientific, Cambridge, MA). SIEVE analysis was as previously described (details in the supplemental section).
Peak areas of all potential LPEs and LPCs in plasma (based on the results of the interlaboratory report) was obtained using TraceFinder 4.1. In-brief, a compound library based on the precursor ion mass (mass error +/−5ppm) of all potential LPCs and LPEs was created within the software. TraceFinder data was then exported as a .csv file for further analysis.
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4

Mitochondrial Profiling of OP and OR Rats

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For chromatographic alignment and peak selection, raw data from the LC-MS profiling experiment in the liver mitochondrial samples from the OP and OR rats were analyzed using the MS label free differential analysis software package SIEVE v 2.1 (Thermo Fisher Scientific and Vast Scientific, Cambridge, MA). A mitochondrial pooled sample analyzed in the middle of the analysis sequence was used as a qualitative reference and for relative quantitation. For identification of PSs, a pooled mitochondrial extract was analyzed using both protiated and deuterated formate (separate injections). Statistical analysis of the identified PSs from the OP and OR mice was done using the non-parametric Mann-Whitney U-test.
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