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19 protocols using ab93434

1

Immunoblotting of Hypoxia Pathway Proteins

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Tissues or cells were lysed on ice in 1× RIPA lysis and extraction buffer (cat. #89900, Thermo Fisher Scientific) with Halt protease inhibitor (cat. #78441, Thermo Fisher Scientific). Protein concentrations were determined using the Pierce BCA Protein Assay Kit (cat. #23225, Thermo Fisher Scientific). Total protein (20 µg) was loaded onto the gels, and blots were developed with primary antibodies against PHD3 (ab184714, Abcam, Cambridge, UK; 1:2000 dilution); HIF1α (D2U3T, Cell Signaling Technology, Danvers, MA, USA; 1:1000 dilution); HIF2α (D9E3, Cell Signaling Technology; 1:1000 dilution); fumarate hydratase (ab95950, Abcam; 1:3000 dilution); EGFR (sc-373746, Santa Cruz Biotechnology, Dallas, TX; 1:1000 dilution). pEGFR (sc-57545, Santa Cruz Biotechnology; 1:200 dilution); glutaminase (GLS1; ab93434, Abcam; 1:1000 dilution), glutaminase 2 (GLS2; NBPI-76544, Novus Biologicals, Littleton, CO, USA; 1:1000 dilution); alanine-serine-cysteine transporter 2 (ASCT2; ABN73, Millipore Sigma, 1:1000 dilution), and β-actin-horseradish peroxidase (5125S or 12262S, Cell Signaling Technology; 1:5000 dilution). Image J (National Institutes of Health, Bethesda, MD, USA) or Image Studio Lite (version 5.2, LI-COR Biosciences, Lincoln, NE, USA) were used to perform densitometry.
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2

Immunofluorescence Analysis of Corneal Proteins

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Excised mouse eyes or human donor cornea button were fixed in 4% paraformaldehyde in 0.1 mol/L phosphate buffer (pH 7.4) at 4 °C overnight and paraffin embedded. Five-micrometer sections were then mounted on Super Frost slides (Fisher Scientific). The sections were de-paraffinized and hydrated in a graded ethanol series (100%, 95% and 70% and 50% ethanol and ddH2O for 5 min each) and subject to antigen retrieval in 10 mM Na-citrate, then blocked with 2% BSA in PBS and incubated overnight at 4 °C with 1st antibodies. After washes in PBS, slides were incubated with Fluor-conjugated 2nd antibody for one hour and washed. Sections were mounted with prolong anti-fade mounting reagent with DAPI (Molecular Probes, Life Technologies) and imaged with AxioImager M1 microscope with AxioCam MRm camera (Zeiss).
The following antibodies were used: Rabbit polyclonal anti-Glutaminase (GLS1) antibody 1:200 (ab93434, Abcam); Rabbit anti-GLS2 antibody 1:200 (ab113509, Abcam); Mouse monoclonal anti-GGT1 antibody 1:200 (ab55138, Abcam); Rabbit anti-ZO1 1:200 (402200, Life Technologies); Mouse anti-ZO1 1:200 (339100, Invitrogen); Rabbit anti-Nitrotyrosine 1:200 (A-21285, Thermo Scientific); Secondary Alexa-488 and Alexa-568 antibodies (Molecular Probes) were used at 1:200 concentrations. Mean intensity (MFI) quantification of endothelium was conducted using ImageJ.
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3

Immunohistochemical Analysis of Mammary Tumors

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Mammary tumor sections (5μm) were deparaffinized and high temperature antigen retrieval was performed, followed by blocking in TBS/BSA 5%, 10% donkey serum and exposure to primary antibody and biotinylated secondary antibody (Vectastain ABC kit, Vector Labs) for immunohistochemistry or Alexa 488, 568 and 647-conjugated secondary antibodies (Thermo Fisher Scientific) for immunofluorescence. Primary antibodies against, GLS1 (ab93434; 1/100) and α-SMA (ab32575; 1/1000 or ab21027; 1/300) were purchased from Abcam. A primary antibody against α-SMA (A2547; 1/300) was purchased from Sigma. A primary antibody against SLC1A3 (sc-7757; 1/100), was purchased from Santa Cruz Biotechnology. A primary antibody against PCNA (13–3900, 1/100) was purchased from Thermo Fisher Scientific. In most cases, color development was achieved by adding streptavidin biotinylated alkaline phosphatase complex (Vector Labs) followed by Vector Red alkaline phosphatase substrate solution (Vector Labs). Levamisole was added to block endogenous alkaline phosphatase activity (Vector Labs). Pictures were obtained using an Olympus Bx51 microscope or ZEISS LSM Exciter confocal microscope. Intensity of staining was quantified using ImageJ software (NIH). All measurements were performed blinded to condition
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4

Protein Expression Analysis in ESCs

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Protein extraction was prepared from ESCs using RIPA buffer (Beyotime Biotechnology) with proteinase and phosphatase inhibitors. After being quantified by the BCA assay kit (Thermo Scientific), equal amounts of proteins were separated by SDS-PAGE gel electrophoresis and transferred to polyvinylidene difluoride membranes (Merck Millipore). Membranes were blocked in 5% BSA (Sigma) at room temperature for 1 h, followed by incubation with primary antibodies against GAPDH (1:10000; Proteintech, 60004-1-Ig), GLS1 (1:1000; Abcam, ab93434), Collagen I (1:1000; Abcam, ab34710), α-SMA (1:1000; Abcam, ab7817), MFN1(1:1000; Abcam, ab57602), MFN2(1:1000; Abcam, ab56889), DRP1(1:1000; Abcam, ab56788), PINK1(1:1000; Cell Signaling Technology, 6946), p-p70-S6K (1:1000; Cell Signaling Technology, 9234), p-4E-BP1 (1:1000; Cell Signaling Technology, 2855) and p-S6 (1:1000; Cell Signaling Technology, 4858) overnight at 4 °C. The membrane was then incubated with HRP-conjugated goat anti-rabbit (1:10000; Proteintech, SA00001-2) or goat anti-mouse (1:10000, Proteintech, SA00001-1) secondary antibodies at room temperature for 1 h. Pageruler (ThermoFisher, 26,616) was used as the molecular marker. Protein expression was visualized with an ECL detection kit (Sigma-Aldrich). GAPDH was used as the loading control.
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5

Co-localization of GLS1 and α-SMA in TGF-β1-treated ESCs

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Immunofluorescence were performed in TGF-β1-treated ESCs to detect the co-localization of GLS1 and α-SMA. ESCs were seeded on 35 mm confocal dishes (Cellvis) at a density of 1 × 104 cells/mL. After treatments, cells were fixed with 4% PFA for 15 min, permeabilized with 0.2% Triton X for 10 min and then blocked with 5% BSA for 45 min at room temperature. Primary antibodies α-SMA (1:200; Abcam, ab7818), GLS1 (1:200; Abcam, ab93434) were used for overnight incubation at 4 °C. DyLight488-conjugated goat anti-rabbit antibody (1:200; Multisciences, GAR4882) and DyLight594-conjugated goat anti-mouse antibody (1:200; Multisciences, GAM5942) were used for detection. DAPI was used to stain cell nucleus, and the stained ESCs were observed by an Olympus FV1200 confocal microscope (Olympus).
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6

Glutaminase Isoforms in AML3 Cells

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The OCI-AML3 cells stably transfected with pHUSH luciferase control, pHUSH puro-KGA, pHUSH puro-GAC, or pHUSH puro-D3 shRNA were grown, collected, washed in PBS, and pelleted before lysing with RIPA buffer (PIERCE) containing protease and phosphatase inhibitors (Roche). After 30 min incubation on ice, cell lysates were subject to sonication (~2 min) and centrifugation (12,000 rpm x 10 min, 4° C). The supernatant was collected and the protein concentration quantified using the BCA Protein Assay (Thermo Scientific). Western blot analysis performed according to standard procedures. Antibodies used in western analyses: GLS (ab93434, Abcam), GAPDH (MAB374, MilliporeSigma), LDH (2012S, Cell Signal Technology), α-tubulin (ab7291, Abcam); and donkey anti-mouse antibody IRDye 800CW (C61116–02, LI-COR), donkey anti-rabbit antibody (C70601–05, LI-COR). GLS (ab93434) recognizes both the KGA and GAC isotypes but not GLS2 [28 (link),29 (link)].
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7

Profiling Hepatocellular Carcinoma Biomarkers

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Tissue microarrays containing 75 paired hepatocellular carcinoma tissues and para-tumor tissues were purchased from Shanghai Outdo Biotech Company (HLiv-HCC150PG-01). The detailed information of the tissue microarrays could be downloaded from website (Error! Hyperlink reference not valid.). IHC staining was performed according to standard protocol using anti-SREBF2 (ab30682, 1:200), anti-SLC1A5 (ab187692, 1:100) and anti-GLS (ab93434, 1:200) from Abcam. The expression of each protein in the tissue was evaluated independently by three pathologists and scored according to staining intensity and percentage as previously described [46 (link)].
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8

Neurotransmitter Receptor Immunostaining

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Antibodies included those against GLS (1:25 for immunohistochemistry, 1:100 for immunocytochemistry, ab93434, Abcam), GRINA (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, ab216953, Abcam), GLUR3 (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, ab232887, Abcam), mGluR1 (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, NB110-39033SS, Novus), mGluR5 (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, ab76316, Abcam), VGLUT1 (1:50 for immunohistochemistry, 48-2400, Invitrogen; 1:100 for immunocytochemistry, 135 303, Synaptic Systems), UNC13B (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, TA308990, Origene), SNAP25 (1:50 for immunohistochemistry, GTX113839, Gene Tex; 1:100 for immunocytochemistry, ab31281, Abcam), GAD1 (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, ab26116, Abcam), SYT11 (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, PA5-96970, Invitrogen), CAST (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, PA5-87352, Invitrogen), and HCN4 (1:50 for immunohistochemistry, 1:100 for immunocytochemistry, SAB5200035, Sigma; SMC-320, StressMarq Biosciences). Alexa Fluor conjugated secondary antibodies were purchased from Abcam.
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9

Western Blot Protein Detection

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Western blots were carried out as previously described [25 (link)]. Primary antibodies for protein detection included: GLS1 (ab93434, Abcam), PARP1 (F-2, Santa Cruz), PAR (Trevigen, Gaithersburg, MD), Actin (C-2, Santa Cruz), small subunit calpain (EPR3324, Abcam), and 53BP1 (Bethyl Laboratories).
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10

Phosphorylation of Glutaminase GAC

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Protein extracts were prepared using NP-40 lysis buffer containing phosphatase and protease inhibitors and the cell lysates were then subjected to Laemmli SDS-PAGE followed by immunoblot using indicated antibodies. The anti-GAC antibody was purchased from Abcam (ab93434). The anti-phospho-serine 314 specific polyclonal antibody against GAC (GAC-pS314) was made by Shanghai Genomics Inc (antigen sequence: YVGKEPS(p)GLRFNK-C; immunogen: Peptide-KLH conjugated). Isoelectric focusing was conducted as previously described44 (link) followed by immunoblot with the anti-V5 antibody.
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