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9 protocols using orca ag cooled ccd camera

1

Visualizing Actin Dynamics in PtK1 Cells

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PtK1 cells were electroporated with EmeraldGFP-tagged LifeAct using the Neon transfection system and plated on acid-treated glass coverslips. Cells were cultured for 48-hours at 37 °C, 5% CO2 and imaged using a Nikon Ti motorized inverted microscope with Perfect Focus System, Yokagawa CSU-X1 spinning disk confocal and Spectral Applied Research Borealis modification, 491 solid-state laser, 100× 1.45 N.A. objective, Hamamatsu ORCA-AG cooled CCD camera, and Metamorph software. Cells were in L-15 medium containing 10% FBS, 20 mM HEPES, and 0.03 U/ml Oxyrase. Experiments using U0126 were carried out using a Nikon TE2000 inverted microscope with Perfect Focus System, Yokogawa CSU-10 spinning disk confocal, 488 solid-state laser, 60× 1.4 N.A. objective, Andor Clara cooled CCD camera, and NIS Elements software.
Cells were imaged for 10 minutes before perturbation and 20 minutes following perturbation (30 min total). PtK1 cell boundaries were detected from the fluorescence microscopy data using a threshold method. Once identified, the edge was then subdivided into 1 micron long segments and their respective velocities were calculated as described previously (25 (link)). For inhibitor-treated experiments, results were obtained from 3–4 independent experiments. For BrafV600E overexpression experiments, results were obtained from 2 independent experiments.
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2

Dual-color Fluorescence Microscopy Imaging

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Fluorescence microscopy was performed using an Olympus IX83 microscope equipped with a ×100/NA 1.40 (Olympus) or a ×100/NA 1.49 (Olympus) objective and Orca-AG cooled CCD camera (Hamamatsu) using Metamorph software (Universal Imaging). Triple color imaging was performed using an Olympus IX81 microscope equipped with a high-speed filter changer (Lambda 10-3; Shutter Instruments) that can change filter sets within 40 ms. All cells were imaged during the early- to mid-logarithmic phase.
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3

Detailed Immunofluorescence Imaging Protocol

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Immunofluorescence was performed as described previously (Munoz Descalzo et al., 2012 (link)). The primary antibodies used are listed in the supplemental information. A Nikon Ti inverted confocal microscope fitted with perfect focus, 20x Plan-Apochromatic objective (NA .75) and Hamamatsu ORCA-AG cooled CCD camera was used for imaging.
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4

Time-lapse Imaging of H2B-GFP Cells

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Time-lapse imaging was performed on a Nikon Ti motorized inverted microscope, which was equipped with a perfect focus system and a humidified incubation chamber (37°C, 5% CO2) (Nikon Imaging Center, Harvard Medical School). Cells stably expressing H2B-GFP were pre-seeded in 24-well glass-bottom plate, and either untreated or treated with doxycyline (100 ng/ml final). Images were captured every 5 min with a 20× objective lens, and a Hamamatsu ORCA-AG cooled CCD camera. Images were analyzed using ImageJ (National Institutes of Health).
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5

Simultaneous Dual-Channel Fluorescence Imaging

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Fluorescence microscopy was performed using an Olympus IX81 microscope equipped with a x100/NA 1.40 (Olympus) objective and Orca-AG cooled CCD camera (Hamamatsu, JAPAN), using Metamorph software (Universal Imaging). Simultaneous imaging of red and green fluorescence was performed using an Olympus IX81 microscope, described above, and an image splitter (Dual-View; Optical Insights) that divided the red and green components of the images with a 565-nm dichroic mirror and passed the red component through a 630/50 nm filter and the green component through a 530/30 nm filter. These split signals were taken simultaneously with one CCD camera, described above.
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6

Multicolor Fluorescence Microscopy Protocol

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Fluorescence microscopy was performed using an Olympus IX81 microscope equipped with a 100×/NA 1.40 (Olympus) objective and Orca-AG cooled CCD camera (Hamamatsu), using MetaMorph software (Universal Imaging). Simultaneous imaging of red and green fluorescence was performed using an Olympus IX81 microscope, described above, and an image splitter (Dual-View; Optical Insights) that divided the red and green components of the images with a 565-nm dichroic mirror and passed the red component through a 630/50 nm filter and the green component through a 530/30 nm filter. These split signals were taken simultaneously with one CCD camera, described above.
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7

High-Resolution 3D Fluorescence Imaging Protocol

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For image acquisition, 3D stacks of 70–90 frame pairs of red and green fluorescent images were obtained sequentially at 200 nm steps along the z axis through the cell using MetaMorph 7.8 software (Molecular Devices) and a high-resolution Nikon Ti inverted microscope equipped with an Orca AG cooled CCD camera with gain set to zero (Hamamatsu) and an 100X/1.4NA (PlanApo) DIC oil immersion objective (Nikon). Stage movement was controlled by MS2000-500 (ASI) with piezo-stage for z-axis stepping (Suzuki et al., 2015 (link); Suzuki et al., 2014 (link)). The image magnification yielded a 64 nm pixel size. Solid state laser (Andor) illuminations at 488 and 568 nm were projected through Borealis (Andor) for uniform illumination of a spinning disk confocal head (Yokogawa CSU-10; Perkin Elmer). Raw 12 bit images without any image processing were used for all Delta, 2D, 3D separation analysis and signal intensity analysis.
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8

Phase Contrast Imaging of Cells

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Phase contrast images were acquired at multiple stage positions using a 20X objective lens on a Nikon Ti motorized inverted microscope with Perfect Focus, Nikon linear-encoded motorized stage, and a Hamamatsu ORCA-AG cooled CCD camera controlled by NIS elements image acquisition software. The microscope was fitted with a 37 °C Incubation Chamber containing 5% CO2.
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9

Cytosolic pH Measurement in HeLa Cells

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The cytosolic pH of HeLa cells was measured with BCECF (2′-7′-bis(carboxyethyl)-5(6)-carboxyfluorescein) as the following protocol. The cells were treated with 10 μM BCECF acetoxymethyl ester (Molecular probes) in Hank’s balanced salt solution (HBSS) for 15 min at 37 °C, followed by washing with HBSS twice. Fluorescence intensity of BCECF of the cells (n = 6) was measured at 37 °C in DMEM using a Nikon TE2000 (Nikon Instruments) equipped a CFI Plan Apo VC 60x oil-immersion objective lens, 1.40 numerical aperture (Nikon Instruments). The following filters (Semrock) were used for the measurement; excitation filters (FF01-445/20 and FF01-482/18), an emission filter (FF01-520/35), and a dichroic mirror (FF495-Di03). Images were captured with an ORCA-AG cooled CCD camera (Hamamatsu photonics). Calibration curve was obtained by imaging BCECF-loaded cells in pH-controlled buffers containing 150 mM KCl, 20 mM NaCl, 0.5 mM MgCl2, 0.5 mM CaCl2, 10 mM MES, 10 mM HEPES, 10 μM monensin and 10 μM nigericin.
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