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4 protocols using hrp conjugated anti rabbit or anti mouse antibodies

1

Western Blot Analysis of Extracellular Matrix Proteins

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After treatment, the cells were washed three times with pre-cooled PBS, and the total protein of cell lysates was extracted with RIPA buffer (Santa Cruz Biotech.). The specific protein was detected by Western blot analysis as previously described[13 (link)]. In brief, the cell lysates or S3 pellet in media were boiled and then electrophoresed in 12% SDS-PAGE acrylamide gels. They were then transferred onto nitrocellulose membranes (Bio-Rad) and incubated for 1 h in TBS-T containing 5% nonfat milk. The membranes were incubated overnight at 4°C with primary antibodies against fibronectin (Santa Cruz Biotech.), laminin β-1 (Santa Cruz Biotech.), Cav-1 (Santa Cruz Biotech.), and ERK phosphorylation (Cell Signaling). The membranes were washed three times in TBS-T and incubated for 1 h at room temperature with corresponding HRP-conjugated anti-rabbit or anti-mouse antibodies (Santa Cruz Biotech.). The membranes were developed with the SuperSignal West Pico HRP substrate kit (Pierce) and photographed on a Kodak 4000 image station (Carestream Molecular Imaging). To control sample loading and protein transfer, we stripped and reprobed the membranes with β-actin (Santa Cruz Biotech.) or total ERK (Cell Signaling) antibody.
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2

Protein Isolation and Western Blot Analysis

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Whole cell proteins were isolated using 1 × SDS buffer containing 62.5 mM Tris-HCL at pH 6.8, 2% w/v SDS, 10% v/v glycerol, 50 mM dithiothreitol, and 0.01% w/v bromophenol blue. The cell suspension was boiled for 10 min and then centrifuged at 13,000 rpm for 8 min. The proteins were resolved by electrophoresis in a 12% SDS-polyacrylamide gel and transferred onto a nitrocellulose membrane (GE Healthcare). The membranes were blocked with 5% skim milk in Tris-buffered saline with 0.1% Tween 20 (TBST). Polyclonal rabbit anti-caldesmon (Sigma-Aldrich, St. Louis, MO) and mouse anti-β-tubulin (Sigma-Aldrich) were used as primary antibodies. HRP-conjugated anti-rabbit or anti-mouse antibodies (Santa Cruz Biotechnology, Dallas, TX) were used as secondary antibodies. The results were visualized using an ECL detection reagent (Santa Cruz Biotechnology).
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3

Western Blot Analysis of Cav-1, Claudin-5, and iNOS

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Cav-1, claudin-5, and iNOS in total cell lysates and subcellular fractions (CF, MF, and ACF) were analyzed by Western blot as we described previously [16 (link)]. In brief, protein samples were electrophoresed in SDS-PAGE acrylamide gels, transferred onto nitrocellulose membranes (Bio-Rad). After blocking with 5 % nonfat milk, membranes were incubated overnight at 4 °C with primary antibodies against Cav-1 (Santa Cruz Biotech, 1:500), claudin-5 (Invitrogen, 1:1000), or iNOS (Invitrogen, 1:500), followed by incubation with corresponding HRP-conjugated anti-rabbit or anti-mouse antibodies (Santa Cruz Biotech, 1:1000). The membranes were developed with the SuperSignal West Pico HRP substrate kit (Pierce) and photographed on a Kodak 4000 image station (Carestream Molecular Imaging). To control sample loading and protein transfer, the membranes were stripped and reprobed with β-actin antibody (Santa Cruz Biotech, 1:1000). For subcellular fraction samples, we noticed that the actin levels were comparable for each sample among different fractions, so we only used one normalizing loading control (CF actin) for all three subcellular fractions.
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4

Protein Expression Analysis in 3D Co-Culture

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For western blotting, proteins were extracted from tissues or cultured cells using RIPA buffer containing phenylmethanesulfonylfluoride (PMSF) (Beyotime, Nantong, China). Equal amounts of protein (100 µg) were separated by SDS-PAGE on a 7.5%/12.5% gel and transferred to a PVDF membrane. Primary polyclonal antibodies targeting IκBα(ab7217), IκBα s36 (ab133462), IL-6 (ab6672), TGF-β (ab2486), PAI-1 (ab142349), SMAD3 (ab40584) and p-SMAD3 s425 (ab51177) were purchased from Abcam. The secondary antibodies used were HRP-conjugated anti-rabbit or anti-mouse antibodies and were purchased from Santa Cruz Biotechnology. The blots were developed using ECL reagent (Millipore, MA, USA). An equal amount of loaded protein in each lane was confirmed using a β-actin antibody. ImageJ software was used to quantify the integrated density of the band. ELISA Levels of PAI-1, TGF-β, CCL-17, IL-6 and CCL-22 were measured in the supernatants from cell cultures with a commerical ELISA kit (Thermo Fisher; BMS2033, 88-8350-86, EHCCL17, BMS213-2 and EMCCL22). The experiments were carried out according to the manufacturer's instructions.
3D co-culture system Differentiated THP-1 and 95D cells were cultured in a 3D Petri Dish (Micro-Tissues) (RI, USA) per manufacturer's instructions. Cell culture supernatants were collected daily for seven days. The cells were then collected, washed with PBS, and stained.
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