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29 protocols using a0485

1

Immunohistochemical Characterization of Mammary Tumors

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Tumors were histopathologically characterized on HE-stained sections following the routine method for histological description of neoplasms [5 (link)]. Immunohistochemical characterization of estrogen and progesterone receptors (ER, Ref. M7047, Dako; PR, Ref. 790-2223, Ventana, Oro Valley, AZ, USA) and human epidermal receptor-2 (HER-2, Ref. A0485, Dako, Santa Clara, CA, USA) was performed. Paraffin sections were placed in a PT module, heated for 20 min at 95 °C, and cooled down to 60 °C. Then, slides were rinsed in warm tap water and placed in an automatic immunostainer device (Lab Vision Corp., Fremont, CA, USA) for immunohistochemistry using a peroxidase detection system. After immunostaining, the slides were counterstained with hematoxylin and permanently mounted with Depex. Corresponding negative control slides were prepared by replacing the primary antibody with nonreactive antibody. Slides from human and canine mammary tumors with previously demonstrated reactivity to the primary antibody and tissue internal controls were used as positive controls [5 (link)].
For estrogen receptor, progesterone receptor, and HER-2 evaluation, 3+ positive scoring was considered, following the recommended guidelines of the American Society of Cancer Oncology (ASCO).
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2

Immunohistochemical Biomarker Evaluation

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Immunoreactions were revealed by Bond Polymer Refine Detection on an automated autostainer (Bond Max, Leica Biosystem, Milan, Italy). ER and PgR expression was evaluated using mAb 6F11 (Leica, Novocastra) and mAb 1A6 (Leica, Novocastra) respectively. Cell proliferation and HER2 overexpression were tested using the Ki-67 mAb (MIB1, Dako, Milan, Italy) and the polyclonal antibody A0485 (Dako), respectively. Tumors were also characterized for cytokeratin 19 expression (Dako). HER2 IHC positivity was defined according to ASCO/CAP guidelines [20 (link)]. ER and PgR were considered positive when >1% and ≥20% of the neoplastic cells showed distinct nuclear immunoreactivity, respectively. Ki-67, based on the median value of our series, was regarded as high if more than 15% of the cell nuclei were immunostained. Evaluation of the IHC results, blinded to all patient data, was performed independently and in blinded manner by two investigators (SB and MM).
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3

Immunohistochemical Analysis of Breast Tumor Markers

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Immunohistochemistry was used to assess the expression of estrogen and progesterone receptors (ER and PR), HER2, and Ki-67 in breast tumors using the following antibodies: mouse anti-ER (Dako, Cat. # IR084, clone 1D5, RTU), mouse anti-PR (Dako, Cat. # IR068, clone PgR636, RTU), rabbit anti-HER2 (Dako, Cat. # A0485, 1:800), and mouse anti-Ki-67 (Dako, Cat. # IR626, clone MIB-1, RTU). Immunohistochemistry was performed as previously described (11 (link)). ER and PR immunostaining was scored using ASCO/CAP Recommendations (12 (link)). HER2 immunostaining was scored using St. Gallen recommendations (13 (link)). Ki-67 immunostaining was expressed as the percentage of positively stained cells. At least 10 fields of view and at least 1,000 cells at 400× magnification (field area = 0.196 mm2) were analyzed per sample. Molecular subtypes of the IC NST were categorized according to St. Gallen recommendations (13 (link)): luminal A (ER+ and/or PR+, HER2, and Ki-67 < 20%), luminal B (ER+ and/or PR+, HER2−/+, and Ki-67 ≥ 20%), HER2-positive (ER, PR, and HER2+), and triple-negative (ER, PR, and HER2).
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4

Automated Immunohistochemical Evaluation of HER2

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IHC was carried out in an automated autostainer (Dako, Denmark) as previously described.15 (link) Briefly, 4-µm formalin-fixed paraffin-embedded sections were dewaxed and incubated in 10 mM/L citrate buffer (pH 6) at 98°C for 40 minutes. Following incubation with the primary rabbit antibody to the intracellular domain of the HER2 protein (A0485, Dako), a visualization reagent (DAKOREAL Envision) was applied. Negative controls were created by omission of the primary antibody and replacement with phosphate buffered saline. Known positive tissues were used as the HER2-positive control. The 4-tiered scoring system suggested by Hofmann et al22 (link) was used for the HER2-staining evaluation.
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5

Immunohistochemical Staining for EGFR and HER2

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Immunohistochemical staining of 3 µm TMA sections with diagnostically approved anti-EGFR (Clone E30, monoclonal mouse, M7239, DAKO, Hamburg, Germany, 1:10) or anti-ERBB2/HER2 antibodies (c-erbB-2, polyclonal rabbit, A0485, DAKO, 1:300) was performed on an autostainer 360 (Thermo Fisher Scientific, Waltham, USA) as previously specified [53 (link)]. For modifications see Supplementary Information.
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6

Immunohistochemical Characterization of Tumor Markers

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The paraffin specimens were made into 3–5 μm sections. For immunohistochemical staining, paraffin sections were deparaffinized in xylene and rehydrated in a graded series of ethanol. After blocking peroxidase activity with hydrogen peroxide and antigen retrieval by heat induced using citrate buffer (pH 9.0), the sections were incubated at 4°C with primary antibodies against EGFR (1:500, clone 3C6, Ventana Medical Systems Inc., Tucson, AZ, USA), C-erb B2 (1:500, A0485, Dako Cytomation, Glostrup, Denmark), Ki-67 (1:100, MIB-1, Dako Cytomation, Glostrup, Denmark), and p53 (1:100, clone DO-7, Dako Cytomation, Glostrup, Denmark). Immunostaining was conducted using the ImmPRESS (MP7410-50, Vector, Burlingame, CA, USA) system and the diaminobenzidine (DAB) kit (Sk4100, Vector). After the reactions, the sections were counterstained with Meyer’s hematoxylin, dehydrated, cleared, and mounted.
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7

Immunohistochemical Analysis of PGC1α and UCP1

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The IHC assay for PGC1α and UCP1 protein was used. Briefly, the paraffin-embedded heart tissue blocks were cut to 3-mm sections that were then deparaffinized and heat treated for antigen retrieval. The antibody, A0485 (DAKO, Carpenteria, CA), was used as the primary antibody in an optimal dilution of 1:3500 determined in our laboratory. Biotinylated, streptavidin/biotin–labeled secondary antibody and related reagents were provided in the Level 2 USA Ultra Streptavidin Multi-Species Detection System (Signet Laboratories, Dedham, MA). All IHC assays were performed on an automated Tech Mate 1000 immunostainer (Ventana Medical Systems, Tucson, AZ).
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8

Immunohistochemical HER-2 Assay in Breast Cancer

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Breast cancer specimens were assessed for HER-2 status using a DAKO autoimmunostainer (DAKO, Carpinteria, CA). Briefly, whole sections (5 μm) were deparaffinized with xylene and rehydrated through graded alcohols to distilled water. Endogenous peroxidase activity was blocked with 0.3% hydrogen peroxide for 10 minutes, and antigens were retrieved for 40 minutes in 10 mmol/L citrate buffer, pH 6.0, with steamer. The whole section slides were incubated with the rabbit anti-human HER-2 polyclonal antibody A0485 (1:500 dilution; DAKO) for 30 minutes at 25°C. Slides were then incubated with a DAKO Envision+ for 30 minutes at 25°C, subsequently reacted with 3,3′-diaminobenzidine as a chromogen substrate for 3 minutes, counterstained using a Modified Harris hematoxylin (Thermo Scientific, Rockford, IL) and coverslipped after dehydration.
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9

Immunohistochemical Analysis of Tumor Markers

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Hematoxylin and eosin (H&E) staining and IHC of formalin-fixed tumor tissues were performed at the Pathology Core Facility at City of Hope. Antibodies used in IHC included ERα (ab16660, Abcam, Cambridge, UK), PR (PA0312, Leica Biosystems Inc., Wetzlar, Germany), HER2 (A0485, Dako, Glostrup, Denmark), and Ki-67 (M7240, Dako, Glostrup, Denmark). The pathologists evaluated five areas randomly, and ER, PR, and Ki-67 positivity (0–100%) and HER2 IHC score (0–3+) were defined according to the guidelines [16 ].
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10

Characterization of Breast Cancer Molecular Subtypes

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We reviewed the patients’ medical records for clinicopathologic findings, including age, mean size of primary breast cancer, presence of symptoms, T-stage, ER status, PR status, HER2 status, and histologic grade. Tumor size was determined based on the pathology report, and was categorized according to the guidelines of the American joint committee on cancer, 7th Edition (16 ).
ER, PR, and HER2 expression in primary tumors were analyzed by IHC staining of formalin-fixed, paraffin-embedded whole sections of resected breast cancer specimens. Primary antibodies for ER (1: 200, 6F11, Novocastra, Newcastle, UK), PR (1: 200, PGR, Novocastra), and HER2 (1: 500, A0485, DAKO, Denmark) were used. ER and PR were considered positive if tumors had more than 10% nuclear-stained cells. HER2 staining was scored on a scale of 0 to 3+, according to the HercepTest guidelines (17 (link)); HER2 was considered positive when graded as 2+, while 0 to 1+ were negative. Histologic grade was classified into two groups, non-high-grade and high-grade, according to the Scarff-Bloom-Richardson grade system (18 (link)). According to hormonal status, each case was designated into one of four distinct molecular subtypes: luminal A, luminal B, HER2-enriched, and TN.
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